Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS28555

Experiment: 36hr PHYTO2 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS28545 and BPHYT_RS28550 are separated by 13 nucleotidesBPHYT_RS28550 and BPHYT_RS28555 overlap by 4 nucleotidesBPHYT_RS28555 and BPHYT_RS28560 overlap by 4 nucleotides BPHYT_RS28545: BPHYT_RS28545 - acetamidase, at 1,959,980 to 1,960,966 _RS28545 BPHYT_RS28550: BPHYT_RS28550 - ABC transporter, at 1,960,980 to 1,961,687 _RS28550 BPHYT_RS28555: BPHYT_RS28555 - branched-chain amino acid ABC transporter ATP-binding protein, at 1,961,684 to 1,962,394 _RS28555 BPHYT_RS28560: BPHYT_RS28560 - ABC transporter permease, at 1,962,391 to 1,963,461 _RS28560 Position (kb) 1961 1962 1963Strain fitness (log2 ratio) -1 0 1at 1962.704 kb on + strand, within BPHYT_RS28560at 1962.995 kb on + strand, within BPHYT_RS28560at 1963.107 kb on + strand, within BPHYT_RS28560at 1963.232 kb on + strand, within BPHYT_RS28560

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO2 MOI 1
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1,962,704 + BPHYT_RS28560 0.29 +1.3
1,962,995 + BPHYT_RS28560 0.56 +0.3
1,963,107 + BPHYT_RS28560 0.67 -0.6
1,963,232 + BPHYT_RS28560 0.79 +1.2

Or see this region's nucleotide sequence