Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS28550

Experiment: 36hr PHYTO2 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS28545 and BPHYT_RS28550 are separated by 13 nucleotidesBPHYT_RS28550 and BPHYT_RS28555 overlap by 4 nucleotidesBPHYT_RS28555 and BPHYT_RS28560 overlap by 4 nucleotides BPHYT_RS28545: BPHYT_RS28545 - acetamidase, at 1,959,980 to 1,960,966 _RS28545 BPHYT_RS28550: BPHYT_RS28550 - ABC transporter, at 1,960,980 to 1,961,687 _RS28550 BPHYT_RS28555: BPHYT_RS28555 - branched-chain amino acid ABC transporter ATP-binding protein, at 1,961,684 to 1,962,394 _RS28555 BPHYT_RS28560: BPHYT_RS28560 - ABC transporter permease, at 1,962,391 to 1,963,461 _RS28560 Position (kb) 1960 1961 1962Strain fitness (log2 ratio) -1 0 1at 1959.981 kb on + strandat 1960.049 kb on + strandat 1960.077 kb on + strandat 1960.077 kb on + strandat 1960.077 kb on + strandat 1960.102 kb on - strand, within BPHYT_RS28545at 1960.576 kb on - strand, within BPHYT_RS28545

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO2 MOI 1
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1,959,981 + +0.8
1,960,049 + +0.0
1,960,077 + +0.5
1,960,077 + -0.4
1,960,077 + -0.8
1,960,102 - BPHYT_RS28545 0.12 +0.5
1,960,576 - BPHYT_RS28545 0.60 +0.9

Or see this region's nucleotide sequence