Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS28205

Experiment: 36hr PHYTO2 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS28200 and BPHYT_RS28205 are separated by 92 nucleotidesBPHYT_RS28205 and BPHYT_RS28210 overlap by 8 nucleotides BPHYT_RS28200: BPHYT_RS28200 - sugar ABC transporter substrate-binding protein, at 1,884,952 to 1,885,959 _RS28200 BPHYT_RS28205: BPHYT_RS28205 - ATPase, at 1,886,052 to 1,887,068 _RS28205 BPHYT_RS28210: BPHYT_RS28210 - ATPase, at 1,887,061 to 1,888,119 _RS28210 Position (kb) 1886 1887 1888Strain fitness (log2 ratio) -2 -1 0 1at 1885.251 kb on + strand, within BPHYT_RS28200at 1885.719 kb on - strand, within BPHYT_RS28200at 1886.358 kb on - strand, within BPHYT_RS28205at 1886.359 kb on + strand, within BPHYT_RS28205at 1886.533 kb on - strand, within BPHYT_RS28205at 1886.559 kb on - strand, within BPHYT_RS28205at 1886.594 kb on + strand, within BPHYT_RS28205at 1886.596 kb on + strand, within BPHYT_RS28205at 1886.642 kb on - strand, within BPHYT_RS28205at 1886.919 kb on + strand, within BPHYT_RS28205

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO2 MOI 1
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1,885,251 + BPHYT_RS28200 0.30 -0.9
1,885,719 - BPHYT_RS28200 0.76 -1.6
1,886,358 - BPHYT_RS28205 0.30 -0.6
1,886,359 + BPHYT_RS28205 0.30 -1.9
1,886,533 - BPHYT_RS28205 0.47 +0.9
1,886,559 - BPHYT_RS28205 0.50 +1.6
1,886,594 + BPHYT_RS28205 0.53 -1.6
1,886,596 + BPHYT_RS28205 0.53 +0.1
1,886,642 - BPHYT_RS28205 0.58 -0.4
1,886,919 + BPHYT_RS28205 0.85 -0.8

Or see this region's nucleotide sequence