Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS28090

Experiment: 36hr PHYTO2 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS28085 and BPHYT_RS28090 are separated by 70 nucleotidesBPHYT_RS28090 and BPHYT_RS28095 are separated by 32 nucleotidesBPHYT_RS28095 and BPHYT_RS28100 are separated by 25 nucleotidesBPHYT_RS28100 and BPHYT_RS28105 are separated by 55 nucleotides BPHYT_RS28085: BPHYT_RS28085 - Fis family transcriptional regulator, at 1,863,862 to 1,865,853 _RS28085 BPHYT_RS28090: BPHYT_RS28090 - ferredoxin, at 1,865,924 to 1,866,235 _RS28090 BPHYT_RS28095: BPHYT_RS28095 - membrane protein, at 1,866,268 to 1,866,462 _RS28095 BPHYT_RS28100: BPHYT_RS28100 - hypothetical protein, at 1,866,488 to 1,866,682 _RS28100 BPHYT_RS28105: BPHYT_RS28105 - hypothetical protein, at 1,866,738 to 1,867,382 _RS28105 Position (kb) 1865 1866 1867Strain fitness (log2 ratio) -1 0 1 2 3 4at 1865.330 kb on - strand, within BPHYT_RS28085at 1865.330 kb on - strand, within BPHYT_RS28085at 1865.333 kb on - strand, within BPHYT_RS28085at 1865.812 kb on - strandat 1865.890 kb on + strandat 1865.891 kb on - strandat 1866.104 kb on + strand, within BPHYT_RS28090at 1866.105 kb on - strand, within BPHYT_RS28090at 1866.153 kb on - strand, within BPHYT_RS28090at 1866.153 kb on - strand, within BPHYT_RS28090at 1866.575 kb on - strand, within BPHYT_RS28100at 1866.591 kb on + strand, within BPHYT_RS28100at 1866.648 kb on + strand, within BPHYT_RS28100at 1866.649 kb on - strand, within BPHYT_RS28100at 1866.773 kb on - strandat 1866.811 kb on + strand, within BPHYT_RS28105at 1866.935 kb on - strand, within BPHYT_RS28105

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO2 MOI 1
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1,865,330 - BPHYT_RS28085 0.74 -0.5
1,865,330 - BPHYT_RS28085 0.74 +0.9
1,865,333 - BPHYT_RS28085 0.74 -0.2
1,865,812 - -0.4
1,865,890 + +0.5
1,865,891 - -0.8
1,866,104 + BPHYT_RS28090 0.58 +4.4
1,866,105 - BPHYT_RS28090 0.58 -0.0
1,866,153 - BPHYT_RS28090 0.73 +0.1
1,866,153 - BPHYT_RS28090 0.73 +0.5
1,866,575 - BPHYT_RS28100 0.45 +1.5
1,866,591 + BPHYT_RS28100 0.53 +1.4
1,866,648 + BPHYT_RS28100 0.82 +0.3
1,866,649 - BPHYT_RS28100 0.83 -1.5
1,866,773 - +1.2
1,866,811 + BPHYT_RS28105 0.11 +0.0
1,866,935 - BPHYT_RS28105 0.31 -0.4

Or see this region's nucleotide sequence