Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS27190

Experiment: 36hr PHYTO2 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS27185 and BPHYT_RS27190 overlap by 8 nucleotidesBPHYT_RS27190 and BPHYT_RS27195 are separated by 39 nucleotides BPHYT_RS27185: BPHYT_RS27185 - D-ribose transporter ATP-binding protein, at 1,676,338 to 1,677,888 _RS27185 BPHYT_RS27190: BPHYT_RS27190 - sugar ABC transporter permease, at 1,677,881 to 1,678,912 _RS27190 BPHYT_RS27195: BPHYT_RS27195 - LacI family transcriptional regulator, at 1,678,952 to 1,679,899 _RS27195 Position (kb) 1677 1678 1679Strain fitness (log2 ratio) -2 -1 0 1 2at 1676.977 kb on + strand, within BPHYT_RS27185at 1676.977 kb on + strand, within BPHYT_RS27185at 1677.388 kb on + strand, within BPHYT_RS27185at 1677.389 kb on - strand, within BPHYT_RS27185at 1678.603 kb on + strand, within BPHYT_RS27190at 1678.694 kb on + strand, within BPHYT_RS27190at 1678.695 kb on - strand, within BPHYT_RS27190at 1678.910 kb on + strandat 1679.067 kb on - strand, within BPHYT_RS27195at 1679.278 kb on + strand, within BPHYT_RS27195at 1679.484 kb on - strand, within BPHYT_RS27195at 1679.772 kb on - strand, within BPHYT_RS27195

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO2 MOI 1
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1,676,977 + BPHYT_RS27185 0.41 -1.5
1,676,977 + BPHYT_RS27185 0.41 +0.3
1,677,388 + BPHYT_RS27185 0.68 -0.7
1,677,389 - BPHYT_RS27185 0.68 -0.8
1,678,603 + BPHYT_RS27190 0.70 -1.6
1,678,694 + BPHYT_RS27190 0.79 -0.3
1,678,695 - BPHYT_RS27190 0.79 +0.1
1,678,910 + +0.8
1,679,067 - BPHYT_RS27195 0.12 +1.0
1,679,278 + BPHYT_RS27195 0.34 +2.4
1,679,484 - BPHYT_RS27195 0.56 +1.4
1,679,772 - BPHYT_RS27195 0.86 -2.0

Or see this region's nucleotide sequence