Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS26080
Experiment: 36hr PHYTO2 MOI 1
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 36hr PHYTO2 MOI 1 |
---|---|---|---|---|---|
remove | |||||
1,425,612 | + | BPHYT_RS26075 | 0.37 | +0.2 | |
1,425,612 | + | BPHYT_RS26075 | 0.37 | +1.6 | |
1,425,612 | + | BPHYT_RS26075 | 0.37 | +0.6 | |
1,426,229 | + | -0.8 | |||
1,426,397 | + | -1.2 | |||
1,426,492 | - | BPHYT_RS26080 | 0.12 | -2.0 | |
1,428,064 | + | BPHYT_RS26085 | 0.14 | +2.1 | |
1,428,064 | + | BPHYT_RS26085 | 0.14 | +2.1 | |
1,428,067 | - | BPHYT_RS26085 | 0.14 | -2.0 | |
1,428,181 | - | BPHYT_RS26085 | 0.26 | +0.0 | |
1,428,334 | - | BPHYT_RS26085 | 0.41 | -0.0 | |
1,428,433 | - | BPHYT_RS26085 | 0.51 | -1.6 |
Or see this region's nucleotide sequence