Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS24130

Experiment: 36hr PHYTO2 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS24125 and BPHYT_RS24130 are separated by 241 nucleotidesBPHYT_RS24130 and BPHYT_RS24135 are separated by 30 nucleotides BPHYT_RS24125: BPHYT_RS24125 - endopolygalacturonase, at 978,791 to 980,806 _RS24125 BPHYT_RS24130: BPHYT_RS24130 - tartronate semialdehyde reductase, at 981,048 to 981,941 _RS24130 BPHYT_RS24135: BPHYT_RS24135 - alpha-dehydro-beta-deoxy-D-glucarate aldolase, at 981,972 to 982,772 _RS24135 Position (kb) 981 982Strain fitness (log2 ratio) -2 -1 0 1 2at 980.767 kb on - strandat 981.744 kb on - strandat 981.923 kb on + strandat 982.082 kb on + strand, within BPHYT_RS24135at 982.305 kb on + strand, within BPHYT_RS24135at 982.305 kb on + strand, within BPHYT_RS24135at 982.736 kb on + strandat 982.754 kb on - strandat 982.885 kb on - strandat 982.885 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO2 MOI 1
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980,767 - -0.1
981,744 - -0.1
981,923 + -0.4
982,082 + BPHYT_RS24135 0.14 +0.3
982,305 + BPHYT_RS24135 0.42 +2.0
982,305 + BPHYT_RS24135 0.42 +0.6
982,736 + +0.8
982,754 - -0.7
982,885 - +0.3
982,885 - -2.0

Or see this region's nucleotide sequence