Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS23395

Experiment: 36hr PHYTO2 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS23390 and BPHYT_RS23395 are separated by 312 nucleotidesBPHYT_RS23395 and BPHYT_RS23400 are separated by 183 nucleotides BPHYT_RS23390: BPHYT_RS23390 - hypothetical protein, at 809,413 to 810,423 _RS23390 BPHYT_RS23395: BPHYT_RS23395 - glycosyl transferase, at 810,736 to 811,872 _RS23395 BPHYT_RS23400: BPHYT_RS23400 - GntR family transcriptional regulator, at 812,056 to 812,754 _RS23400 Position (kb) 810 811 812Strain fitness (log2 ratio) -2 -1 0 1at 809.905 kb on - strand, within BPHYT_RS23390at 811.394 kb on - strand, within BPHYT_RS23395at 811.644 kb on + strand, within BPHYT_RS23395at 811.960 kb on + strandat 812.026 kb on + strandat 812.774 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO2 MOI 1
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809,905 - BPHYT_RS23390 0.49 -0.8
811,394 - BPHYT_RS23395 0.58 -1.8
811,644 + BPHYT_RS23395 0.80 -0.7
811,960 + +0.1
812,026 + +1.7
812,774 - +0.3

Or see this region's nucleotide sequence