Experiment: 36hr PHYTO2 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS22710 and BPHYT_RS22715 are separated by 442 nucleotides BPHYT_RS22715 and BPHYT_RS22720 are separated by 178 nucleotides
BPHYT_RS22710: BPHYT_RS22710 - XRE family transcriptional regulator, at 650,350 to 650,919
_RS22710
BPHYT_RS22715: BPHYT_RS22715 - L-2-keto-3-deoxyarabonate dehydratase (EC 4.2.1.43) <small>(from data)</small>, at 651,362 to 652,294
_RS22715
BPHYT_RS22720: BPHYT_RS22720 - LysR family transcriptional regulator, at 652,473 to 653,456
_RS22720
Position (kb) 651
652
653 Strain fitness (log2 ratio) -2
-1
0
1
2 at 650.410 kb on - strand, within BPHYT_RS22710 at 650.449 kb on - strand, within BPHYT_RS22710 at 650.784 kb on + strand, within BPHYT_RS22710 at 650.825 kb on + strand, within BPHYT_RS22710 at 650.948 kb on + strand at 650.949 kb on - strand at 650.954 kb on - strand at 650.976 kb on + strand at 650.976 kb on + strand at 651.081 kb on - strand at 651.198 kb on - strand at 651.198 kb on - strand at 651.198 kb on - strand at 651.363 kb on + strand at 651.364 kb on - strand at 651.598 kb on - strand, within BPHYT_RS22715 at 651.598 kb on - strand, within BPHYT_RS22715 at 651.916 kb on - strand, within BPHYT_RS22715 at 651.916 kb on - strand, within BPHYT_RS22715 at 652.024 kb on - strand, within BPHYT_RS22715 at 652.408 kb on + strand at 652.411 kb on - strand at 652.411 kb on - strand at 652.760 kb on - strand, within BPHYT_RS22720 at 652.974 kb on + strand, within BPHYT_RS22720 at 652.975 kb on - strand, within BPHYT_RS22720 at 652.981 kb on - strand, within BPHYT_RS22720 at 653.091 kb on + strand, within BPHYT_RS22720
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO2 MOI 1 remove 650,410 - BPHYT_RS22710 0.11 -0.4 650,449 - BPHYT_RS22710 0.17 -1.7 650,784 + BPHYT_RS22710 0.76 +2.3 650,825 + BPHYT_RS22710 0.83 -1.7 650,948 + +0.6 650,949 - -1.7 650,954 - +0.0 650,976 + -0.8 650,976 + +0.2 651,081 - -1.1 651,198 - -2.0 651,198 - -0.0 651,198 - -0.2 651,363 + +1.3 651,364 - +1.0 651,598 - BPHYT_RS22715 0.25 -0.3 651,598 - BPHYT_RS22715 0.25 -0.1 651,916 - BPHYT_RS22715 0.59 +1.6 651,916 - BPHYT_RS22715 0.59 -0.2 652,024 - BPHYT_RS22715 0.71 +1.5 652,408 + +0.0 652,411 - -0.4 652,411 - +0.5 652,760 - BPHYT_RS22720 0.29 -0.5 652,974 + BPHYT_RS22720 0.51 -0.5 652,975 - BPHYT_RS22720 0.51 +0.5 652,981 - BPHYT_RS22720 0.52 -1.2 653,091 + BPHYT_RS22720 0.63 -1.8
Or see this region's nucleotide sequence