Experiment: 36hr PHYTO2 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS20750 and BPHYT_RS20755 are separated by 110 nucleotides BPHYT_RS20755 and BPHYT_RS20760 are separated by 251 nucleotides
BPHYT_RS20750: BPHYT_RS20750 - LacI family transcriptional regulator, at 216,418 to 217,356
_RS20750
BPHYT_RS20755: BPHYT_RS20755 - fuconate dehydratase, at 217,467 to 218,765
_RS20755
BPHYT_RS20760: BPHYT_RS20760 - oxidoreductase domain-containing protein, at 219,017 to 219,985
_RS20760
Position (kb) 217
218
219 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 216.483 kb on - strand at 216.722 kb on + strand, within BPHYT_RS20750 at 216.986 kb on - strand, within BPHYT_RS20750 at 217.465 kb on - strand at 217.572 kb on + strand at 217.695 kb on - strand, within BPHYT_RS20755 at 218.545 kb on - strand, within BPHYT_RS20755 at 218.613 kb on + strand, within BPHYT_RS20755 at 218.670 kb on + strand at 218.672 kb on + strand at 218.673 kb on - strand at 218.773 kb on + strand at 218.815 kb on + strand at 218.937 kb on - strand at 219.027 kb on - strand at 219.027 kb on - strand at 219.074 kb on + strand at 219.074 kb on + strand at 219.074 kb on + strand at 219.211 kb on - strand, within BPHYT_RS20760 at 219.271 kb on + strand, within BPHYT_RS20760 at 219.272 kb on - strand, within BPHYT_RS20760 at 219.272 kb on - strand, within BPHYT_RS20760 at 219.517 kb on - strand, within BPHYT_RS20760 at 219.521 kb on - strand, within BPHYT_RS20760 at 219.582 kb on + strand, within BPHYT_RS20760 at 219.626 kb on + strand, within BPHYT_RS20760
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO2 MOI 1 remove 216,483 - +0.5 216,722 + BPHYT_RS20750 0.32 +0.5 216,986 - BPHYT_RS20750 0.60 +2.4 217,465 - -2.2 217,572 + +0.9 217,695 - BPHYT_RS20755 0.18 +0.1 218,545 - BPHYT_RS20755 0.83 -0.6 218,613 + BPHYT_RS20755 0.88 +1.5 218,670 + -1.7 218,672 + +0.1 218,673 - -1.8 218,773 + +4.5 218,815 + +0.1 218,937 - +0.9 219,027 - +0.0 219,027 - -0.6 219,074 + +2.1 219,074 + +0.7 219,074 + -0.8 219,211 - BPHYT_RS20760 0.20 +1.1 219,271 + BPHYT_RS20760 0.26 -0.8 219,272 - BPHYT_RS20760 0.26 +0.0 219,272 - BPHYT_RS20760 0.26 +0.1 219,517 - BPHYT_RS20760 0.52 -1.3 219,521 - BPHYT_RS20760 0.52 -0.5 219,582 + BPHYT_RS20760 0.58 +0.1 219,626 + BPHYT_RS20760 0.63 -0.2
Or see this region's nucleotide sequence