Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS20585

Experiment: 36hr PHYTO2 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS20580 and BPHYT_RS20585 are separated by 229 nucleotidesBPHYT_RS20585 and BPHYT_RS20590 are separated by 132 nucleotidesBPHYT_RS20590 and BPHYT_RS20595 are separated by 162 nucleotides BPHYT_RS20580: BPHYT_RS20580 - NADH dehydrogenase, at 177,919 to 179,145 _RS20580 BPHYT_RS20585: BPHYT_RS20585 - MarR family transcriptional regulator, at 179,375 to 179,836 _RS20585 BPHYT_RS20590: BPHYT_RS20590 - methionine sulfoxide reductase A, at 179,969 to 180,475 _RS20590 BPHYT_RS20595: BPHYT_RS20595 - hypothetical protein, at 180,638 to 180,910 _RS20595 Position (kb) 179 180Strain fitness (log2 ratio) -3 -2 -1 0 1at 178.991 kb on + strand, within BPHYT_RS20580at 178.992 kb on - strand, within BPHYT_RS20580at 178.992 kb on - strand, within BPHYT_RS20580at 179.033 kb on - strandat 179.033 kb on - strandat 179.237 kb on - strandat 180.372 kb on + strand, within BPHYT_RS20590at 180.373 kb on - strand, within BPHYT_RS20590at 180.373 kb on - strand, within BPHYT_RS20590at 180.390 kb on - strand, within BPHYT_RS20590at 180.721 kb on - strand, within BPHYT_RS20595at 180.816 kb on + strand, within BPHYT_RS20595

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO2 MOI 1
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178,991 + BPHYT_RS20580 0.87 +0.1
178,992 - BPHYT_RS20580 0.87 +0.9
178,992 - BPHYT_RS20580 0.87 +0.1
179,033 - -0.8
179,033 - -2.9
179,237 - -0.9
180,372 + BPHYT_RS20590 0.79 -0.8
180,373 - BPHYT_RS20590 0.80 -0.9
180,373 - BPHYT_RS20590 0.80 -1.6
180,390 - BPHYT_RS20590 0.83 -1.7
180,721 - BPHYT_RS20595 0.30 +0.7
180,816 + BPHYT_RS20595 0.65 -0.6

Or see this region's nucleotide sequence