Experiment: 36hr PHYTO2 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS20460 and BPHYT_RS20465 are separated by 116 nucleotides BPHYT_RS20465 and BPHYT_RS20470 are separated by 55 nucleotides BPHYT_RS20470 and BPHYT_RS20475 are separated by 32 nucleotides
BPHYT_RS20460: BPHYT_RS20460 - NmrA family transcriptional regulator, at 152,561 to 153,442
_RS20460
BPHYT_RS20465: BPHYT_RS20465 - LysR family transcriptional regulator, at 153,559 to 154,443
_RS20465
BPHYT_RS20470: BPHYT_RS20470 - hypothetical protein, at 154,499 to 155,131
_RS20470
BPHYT_RS20475: BPHYT_RS20475 - hypothetical protein, at 155,164 to 156,384
_RS20475
Position (kb) 153
154
155 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 152.757 kb on - strand, within BPHYT_RS20460 at 152.757 kb on - strand, within BPHYT_RS20460 at 152.859 kb on + strand, within BPHYT_RS20460 at 152.859 kb on + strand, within BPHYT_RS20460 at 152.859 kb on + strand, within BPHYT_RS20460 at 152.860 kb on - strand, within BPHYT_RS20460 at 152.975 kb on - strand, within BPHYT_RS20460 at 152.980 kb on - strand, within BPHYT_RS20460 at 153.033 kb on + strand, within BPHYT_RS20460 at 153.034 kb on - strand, within BPHYT_RS20460 at 153.150 kb on + strand, within BPHYT_RS20460 at 153.150 kb on + strand, within BPHYT_RS20460 at 153.418 kb on + strand at 153.428 kb on + strand at 153.482 kb on + strand at 153.970 kb on + strand, within BPHYT_RS20465 at 154.073 kb on + strand, within BPHYT_RS20465 at 154.361 kb on - strand at 154.551 kb on + strand at 154.552 kb on - strand at 154.552 kb on - strand at 154.907 kb on - strand, within BPHYT_RS20470 at 155.192 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO2 MOI 1 remove 152,757 - BPHYT_RS20460 0.22 +0.4 152,757 - BPHYT_RS20460 0.22 +1.4 152,859 + BPHYT_RS20460 0.34 -2.6 152,859 + BPHYT_RS20460 0.34 +0.6 152,859 + BPHYT_RS20460 0.34 +0.7 152,860 - BPHYT_RS20460 0.34 -0.6 152,975 - BPHYT_RS20460 0.47 -1.3 152,980 - BPHYT_RS20460 0.48 -2.8 153,033 + BPHYT_RS20460 0.54 +1.9 153,034 - BPHYT_RS20460 0.54 +1.0 153,150 + BPHYT_RS20460 0.67 -0.8 153,150 + BPHYT_RS20460 0.67 +0.7 153,418 + -1.4 153,428 + +0.7 153,482 + +0.3 153,970 + BPHYT_RS20465 0.46 -0.5 154,073 + BPHYT_RS20465 0.58 -1.7 154,361 - -0.7 154,551 + -1.3 154,552 - +0.6 154,552 - -0.8 154,907 - BPHYT_RS20470 0.64 -0.2 155,192 - +0.4
Or see this region's nucleotide sequence