Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS16855

Experiment: 36hr PHYTO2 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	36hr PHYTO2 MOI 1
3,823,584	+		BPHYT_RS16845	0.48	-1.0
3,823,585	-		BPHYT_RS16845	0.49	-2.1
3,823,665	+		BPHYT_RS16845	0.58	-1.1
3,823,665	+		BPHYT_RS16845	0.58	-0.0
3,823,666	-		BPHYT_RS16845	0.58	+0.7
3,823,666	-		BPHYT_RS16845	0.58	-0.8
3,823,680	+		BPHYT_RS16845	0.59	+0.3
3,823,889	+		BPHYT_RS16845	0.83	-1.5
3,823,898	+		BPHYT_RS16845	0.84	-1.2
3,823,899	-		BPHYT_RS16845	0.85	-0.4
3,823,947	+				-2.2
3,824,006	-				-1.3
3,824,006	-				-2.5
3,824,032	-				+0.7
3,824,191	-		BPHYT_RS16850	0.10	+0.1
3,824,304	+		BPHYT_RS16850	0.38	+0.3
3,824,304	+		BPHYT_RS16850	0.38	-1.1
3,824,304	+		BPHYT_RS16850	0.38	+0.6
3,824,304	+		BPHYT_RS16850	0.38	-0.0
3,824,304	+		BPHYT_RS16850	0.38	-1.1
3,824,304	+		BPHYT_RS16850	0.38	-0.5
3,824,304	+		BPHYT_RS16850	0.38	-0.5
3,824,304	+		BPHYT_RS16850	0.38	+1.7
3,824,304	+		BPHYT_RS16850	0.38	-1.2
3,824,304	+		BPHYT_RS16850	0.38	-1.0
3,824,305	-		BPHYT_RS16850	0.38	-1.0
3,824,305	-		BPHYT_RS16850	0.38	+0.3
3,824,305	-		BPHYT_RS16850	0.38	+0.1
3,824,305	-		BPHYT_RS16850	0.38	+1.0
3,824,305	-		BPHYT_RS16850	0.38	-0.2
3,824,305	-		BPHYT_RS16850	0.38	-1.0
3,824,305	-		BPHYT_RS16850	0.38	+0.9
3,824,403	+		BPHYT_RS16850	0.62	+0.3
3,824,403	+		BPHYT_RS16850	0.62	-0.0
3,824,403	+		BPHYT_RS16850	0.62	+0.3
3,824,403	+		BPHYT_RS16850	0.62	-1.2
3,824,403	+		BPHYT_RS16850	0.62	+0.8
3,824,403	+		BPHYT_RS16850	0.62	-1.7
3,824,403	+		BPHYT_RS16850	0.62	-1.0
3,824,403	+		BPHYT_RS16850	0.62	+1.7
3,824,403	+		BPHYT_RS16850	0.62	-0.1
3,824,403	+		BPHYT_RS16850	0.62	+1.0
3,824,403	+		BPHYT_RS16850	0.62	-0.2
3,824,404	-		BPHYT_RS16850	0.62	+0.5
3,824,404	-		BPHYT_RS16850	0.62	-2.0
3,824,404	-		BPHYT_RS16850	0.62	+0.2
3,824,404	-		BPHYT_RS16850	0.62	-0.5
3,824,404	-		BPHYT_RS16850	0.62	+0.4
3,824,404	-		BPHYT_RS16850	0.62	-0.5
3,824,409	+		BPHYT_RS16850	0.63	-0.9
3,824,409	+		BPHYT_RS16850	0.63	-1.3
3,824,433	+		BPHYT_RS16850	0.69	+2.1
3,824,434	-		BPHYT_RS16850	0.69	+0.0
3,824,572	-				+0.0
3,824,572	-				+0.6
3,824,719	+		BPHYT_RS16855	0.19	+0.6
3,824,720	-		BPHYT_RS16855	0.19	-0.0
3,824,811	+		BPHYT_RS16855	0.31	+1.6
3,825,319	+				-1.8
3,825,320	-				-1.8
3,825,353	+				-0.5
3,825,353	+				-1.7
3,825,353	+				-1.0
3,825,354	-				-1.3
3,825,354	-				+0.8
3,825,426	+				-1.0
3,825,820	+		BPHYT_RS16860	0.65	+0.7
3,825,820	+		BPHYT_RS16860	0.65	+0.7
3,826,046	-				-1.6
3,826,046	-				-0.8
3,826,046	-				-3.0
3,826,046	-				+0.2
3,826,062	+				-0.9
3,826,062	+				+0.4
3,826,062	+				-1.2
3,826,062	+				-1.2
3,826,063	-				+1.1
3,826,077	+		BPHYT_RS16865	0.10	-1.0
3,826,078	-		BPHYT_RS16865	0.11	-1.0
3,826,080	+		BPHYT_RS16865	0.11	+0.3
3,826,138	+		BPHYT_RS16865	0.25	-2.4
3,826,164	+		BPHYT_RS16865	0.31	-1.0
3,826,165	-		BPHYT_RS16865	0.31	-1.5
3,826,165	-		BPHYT_RS16865	0.31	+1.1
3,826,174	-		BPHYT_RS16865	0.34	-0.7
3,826,176	+		BPHYT_RS16865	0.34	-3.2
3,826,177	-		BPHYT_RS16865	0.34	-2.5
3,826,220	+		BPHYT_RS16865	0.45	-1.5
3,826,240	-		BPHYT_RS16865	0.49	-1.8
3,826,276	+		BPHYT_RS16865	0.58	-1.2