Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS16310

Experiment: 36hr PHYTO2 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	36hr PHYTO2 MOI 1
3,700,538	-		BPHYT_RS16305	0.25	-1.1
3,700,538	-		BPHYT_RS16305	0.25	-1.0
3,700,639	+		BPHYT_RS16305	0.35	-0.3
3,700,639	+		BPHYT_RS16305	0.35	-1.8
3,700,640	-		BPHYT_RS16305	0.35	+1.5
3,700,640	-		BPHYT_RS16305	0.35	-0.6
3,700,640	-		BPHYT_RS16305	0.35	-0.5
3,700,640	-		BPHYT_RS16305	0.35	+0.3
3,700,870	+		BPHYT_RS16305	0.58	-0.4
3,700,871	-		BPHYT_RS16305	0.58	+0.4
3,700,975	+		BPHYT_RS16305	0.69	+2.3
3,701,322	+				+0.0
3,701,483	+		BPHYT_RS16310	0.35	-1.8
3,701,510	+		BPHYT_RS16310	0.39	+0.3
3,701,510	+		BPHYT_RS16310	0.39	+0.1
3,701,510	+		BPHYT_RS16310	0.39	+0.3
3,701,510	+		BPHYT_RS16310	0.39	+0.9
3,701,510	+		BPHYT_RS16310	0.39	+0.0
3,701,511	-		BPHYT_RS16310	0.39	+0.8
3,701,511	-		BPHYT_RS16310	0.39	+1.0
3,701,527	+		BPHYT_RS16310	0.42	-1.0
3,701,528	-		BPHYT_RS16310	0.42	+0.2
3,701,784	+		BPHYT_RS16310	0.86	-0.5
3,701,785	-		BPHYT_RS16310	0.86	-1.0
3,701,830	+				-1.1
3,701,831	-				-0.5
3,701,871	+				+0.7
3,702,024	+				+0.3
3,702,024	+				-0.6
3,702,024	+				-1.2
3,702,024	+				-0.1
3,702,024	+				-0.4
3,702,025	-				+0.6
3,702,025	-				-1.0
3,702,025	-				+1.7
3,702,027	+				+0.7
3,702,028	-				-0.7
3,702,263	-		BPHYT_RS16315	0.19	-0.0
3,702,579	+		BPHYT_RS16315	0.37	-0.6
3,702,633	+		BPHYT_RS16315	0.40	-0.1
3,702,633	+		BPHYT_RS16315	0.40	-0.2
3,702,634	-		BPHYT_RS16315	0.40	-0.3
3,702,634	-		BPHYT_RS16315	0.40	-0.2
3,702,634	-		BPHYT_RS16315	0.40	+0.1
3,702,729	+		BPHYT_RS16315	0.46	+0.4
3,702,729	+		BPHYT_RS16315	0.46	-0.0
3,702,730	-		BPHYT_RS16315	0.46	+0.9
3,702,730	-		BPHYT_RS16315	0.46	-1.4
3,702,804	+		BPHYT_RS16315	0.50	-1.1