Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS12965

Experiment: 36hr PHYTO2 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	36hr PHYTO2 MOI 1
2,958,795	+				-0.8
2,958,795	+				-0.5
2,958,796	-				+0.5
2,958,809	+		BPHYT_RS12960	0.11	-1.0
2,958,810	-		BPHYT_RS12960	0.11	+0.2
2,958,821	+		BPHYT_RS12960	0.12	+0.7
2,958,822	-		BPHYT_RS12960	0.12	-0.7
2,958,837	+		BPHYT_RS12960	0.14	-0.2
2,958,837	+		BPHYT_RS12960	0.14	+0.0
2,958,837	+		BPHYT_RS12960	0.14	+0.5
2,958,837	+		BPHYT_RS12960	0.14	+0.6
2,958,838	-		BPHYT_RS12960	0.14	+1.8
2,958,838	-		BPHYT_RS12960	0.14	+0.0
2,959,023	+		BPHYT_RS12960	0.36	-0.7
2,959,039	-		BPHYT_RS12960	0.38	-0.4
2,959,168	-		BPHYT_RS12960	0.54	-0.2
2,959,306	+		BPHYT_RS12960	0.70	-0.3
2,959,363	-		BPHYT_RS12960	0.77	+1.1
2,959,648	+				+0.3
2,959,648	+				-0.0
2,959,649	-				+0.4
2,959,917	+		BPHYT_RS12965	0.22	-0.3
2,960,007	+		BPHYT_RS12965	0.31	-0.6
2,960,008	-		BPHYT_RS12965	0.31	-0.1
2,960,069	+		BPHYT_RS12965	0.37	-0.6
2,960,242	-		BPHYT_RS12965	0.54	+0.0
2,960,274	+		BPHYT_RS12965	0.57	-0.4
2,960,275	-		BPHYT_RS12965	0.58	+5.0
2,960,347	+		BPHYT_RS12965	0.65	+0.8
2,960,347	+		BPHYT_RS12965	0.65	+0.9
2,960,348	-		BPHYT_RS12965	0.65	+0.1
2,960,440	+		BPHYT_RS12965	0.74	-0.5
2,960,440	+		BPHYT_RS12965	0.74	+1.3
2,960,441	-		BPHYT_RS12965	0.74	-0.2
2,960,441	-		BPHYT_RS12965	0.74	-0.3
2,960,441	-		BPHYT_RS12965	0.74	-0.2
2,960,442	+		BPHYT_RS12965	0.74	+0.7
2,960,443	-		BPHYT_RS12965	0.74	+1.0
2,960,443	-		BPHYT_RS12965	0.74	-0.6
2,960,443	-				+2.4
2,960,443	-		BPHYT_RS12965	0.74	-0.0
2,960,523	+		BPHYT_RS12965	0.82	-1.0
2,960,562	+		BPHYT_RS12965	0.86	-0.6
2,960,563	-		BPHYT_RS12965	0.86	-1.2
2,960,574	+		BPHYT_RS12965	0.87	+1.7
2,960,590	-		BPHYT_RS12965	0.89	-0.4
2,960,637	+				-0.0
2,960,638	-				-1.5
2,960,800	+				+1.6
2,960,801	-				+0.0
2,960,801	-				+0.1
2,960,894	+		BPHYT_RS12970	0.13	+2.0
2,960,895	-		BPHYT_RS12970	0.14	+0.8
2,960,905	+		BPHYT_RS12970	0.15	-0.5
2,960,975	+		BPHYT_RS12970	0.21	-0.2
2,960,976	-		BPHYT_RS12970	0.21	-1.4
2,961,131	-		BPHYT_RS12970	0.37	-0.1
2,961,160	+		BPHYT_RS12970	0.40	-0.6
2,961,161	-		BPHYT_RS12970	0.40	-0.9
2,961,302	+		BPHYT_RS12970	0.53	+0.6
2,961,311	+		BPHYT_RS12970	0.54	+0.6
2,961,376	+		BPHYT_RS12970	0.61	-1.7
2,961,377	-		BPHYT_RS12970	0.61	+0.3
2,961,377	-		BPHYT_RS12970	0.61	-0.6
2,961,382	+		BPHYT_RS12970	0.61	+0.8
2,961,382	+		BPHYT_RS12970	0.61	+0.3
2,961,382	+		BPHYT_RS12970	0.61	-0.7
2,961,383	-		BPHYT_RS12970	0.61	-0.4
2,961,383	-		BPHYT_RS12970	0.61	-1.0
2,961,383	-		BPHYT_RS12970	0.61	+0.8