Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS12485

Experiment: 36hr PHYTO2 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	36hr PHYTO2 MOI 1
2,846,695	-		BPHYT_RS12480	0.35	+1.1
2,846,695	-		BPHYT_RS12480	0.35	+0.4
2,846,834	-		BPHYT_RS12480	0.45	-1.4
2,847,222	+		BPHYT_RS12480	0.73	-0.6
2,847,896	+		BPHYT_RS12485	0.62	-0.8
2,847,897	-		BPHYT_RS12485	0.62	-1.8
2,847,995	+		BPHYT_RS12485	0.80	-0.3
2,847,996	-		BPHYT_RS12485	0.80	-0.8
2,848,010	+		BPHYT_RS12485	0.83	-1.8
2,848,010	+		BPHYT_RS12485	0.83	-0.2
2,848,067	+				+0.3
2,848,068	-				-1.5
2,848,120	-				-0.8
2,848,132	-				+0.6
2,848,133	+				+0.3
2,848,133	+				+0.2
2,848,134	-				+0.5
2,848,134	-				+0.1
2,848,134	-				-0.1
2,848,134	-				-0.2
2,848,421	+		BPHYT_RS12490	0.23	+0.3
2,848,422	-		BPHYT_RS12490	0.23	-1.2
2,848,593	+		BPHYT_RS12490	0.36	-0.2
2,848,635	+		BPHYT_RS12490	0.40	+0.9
2,848,635	+		BPHYT_RS12490	0.40	+1.0
2,848,636	-		BPHYT_RS12490	0.40	+1.3
2,848,636	-		BPHYT_RS12490	0.40	-0.9
2,848,636	-		BPHYT_RS12490	0.40	-1.6
2,848,636	-		BPHYT_RS12490	0.40	-1.3
2,848,658	-		BPHYT_RS12490	0.42	-0.9
2,848,682	+		BPHYT_RS12490	0.44	-1.1
2,848,785	+		BPHYT_RS12490	0.52	+0.4
2,848,785	+		BPHYT_RS12490	0.52	-0.5
2,848,786	-		BPHYT_RS12490	0.52	-0.5
2,849,048	+		BPHYT_RS12490	0.73	+0.7
2,849,048	+		BPHYT_RS12490	0.73	-1.4
2,849,070	+		BPHYT_RS12490	0.75	+0.5
2,849,070	+		BPHYT_RS12490	0.75	+1.0
2,849,070	+		BPHYT_RS12490	0.75	+0.8
2,849,070	+		BPHYT_RS12490	0.75	+2.3