Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS12430

Experiment: 36hr PHYTO2 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	36hr PHYTO2 MOI 1
2,834,133	-				+1.4
2,834,133	-				+0.0
2,834,344	-		BPHYT_RS12430	0.14	-0.8
2,834,385	-		BPHYT_RS12430	0.17	+0.6
2,834,572	-		BPHYT_RS12430	0.30	-0.0
2,834,572	-		BPHYT_RS12430	0.30	+0.3
2,834,572	-		BPHYT_RS12430	0.30	-0.2
2,834,620	-		BPHYT_RS12430	0.34	-0.0
2,834,679	+		BPHYT_RS12430	0.38	+3.1
2,834,680	-		BPHYT_RS12430	0.38	+0.1
2,834,705	-		BPHYT_RS12430	0.40	+0.0
2,834,705	-		BPHYT_RS12430	0.40	-0.0
2,834,751	-		BPHYT_RS12430	0.43	+0.1
2,834,751	-		BPHYT_RS12430	0.43	+0.3
2,834,751	-		BPHYT_RS12430	0.43	-0.1
2,834,888	-		BPHYT_RS12430	0.53	+0.3
2,834,888	-		BPHYT_RS12430	0.53	+0.8
2,834,888	-		BPHYT_RS12430	0.53	+1.7
2,834,888	-		BPHYT_RS12430	0.53	+0.7
2,834,888	-		BPHYT_RS12430	0.53	-1.2
2,834,937	+		BPHYT_RS12430	0.57	+0.8
2,834,938	-		BPHYT_RS12430	0.57	+0.8
2,834,938	-		BPHYT_RS12430	0.57	+1.2
2,834,938	-		BPHYT_RS12430	0.57	-0.4
2,835,084	+				+5.1
2,835,108	+		BPHYT_RS12430	0.69	+0.1
2,835,109	-		BPHYT_RS12430	0.69	+2.2
2,835,142	-		BPHYT_RS12430	0.71	-0.5
2,835,341	-		BPHYT_RS12430	0.85	+0.3
2,835,351	+		BPHYT_RS12430	0.86	+0.9
2,835,352	-		BPHYT_RS12430	0.86	+1.0
2,835,436	-				+1.1
2,835,441	+				+4.9
2,835,441	+				+2.7
2,835,442	-				+0.2
2,835,442	-				+1.3
2,835,442	-				-0.5
2,835,462	+				-1.3
2,835,462	+				+0.7
2,835,463	-				+0.3
2,835,463	-				-0.4
2,835,525	+				+0.3
2,835,525	+				+3.3
2,835,526	-				+1.3
2,835,762	+				+0.2
2,835,764	+				-0.0
2,835,764	+				+1.1
2,835,765	-				+0.7
2,836,528	+				-1.9