Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS12225

Experiment: 36hr PHYTO2 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	36hr PHYTO2 MOI 1
2,791,470	+		BPHYT_RS12220	0.76	+0.3
2,791,470	+		BPHYT_RS12220	0.76	+0.1
2,791,470	+		BPHYT_RS12220	0.76	-0.6
2,791,470	+		BPHYT_RS12220	0.76	-1.0
2,791,471	-		BPHYT_RS12220	0.76	-0.2
2,792,063	+				+0.5
2,792,064	-				-1.3
2,792,187	-				+0.0
2,792,691	+		BPHYT_RS12225	0.39	+0.5
2,792,692	-		BPHYT_RS12225	0.39	-0.1
2,792,692	-		BPHYT_RS12225	0.39	-1.8
2,792,906	-		BPHYT_RS12225	0.60	+2.3
2,792,974	-		BPHYT_RS12225	0.66	+0.7
2,793,321	+				-0.7
2,793,322	-				+0.5
2,793,604	+		BPHYT_RS12230	0.21	+0.6
2,793,693	+		BPHYT_RS12230	0.53	-0.2
2,793,873	+				+3.3
2,793,894	-				+1.9
2,793,898	+				+0.0
2,793,898	+				+0.6
2,793,915	+				+0.8
2,793,915	+				-0.7
2,793,970	-				+0.2
2,793,970	-				+0.4
2,793,970	-				-0.2
2,794,028	+				-0.5
2,794,028	+				-1.4