Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS11720

Experiment: 36hr PHYTO2 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS11715 and BPHYT_RS11720 are separated by 146 nucleotidesBPHYT_RS11720 and BPHYT_RS11725 overlap by 8 nucleotidesBPHYT_RS11725 and BPHYT_RS11730 are separated by 10 nucleotides BPHYT_RS11715: BPHYT_RS11715 - allantoin permease, at 2,657,104 to 2,658,531 _RS11715 BPHYT_RS11720: BPHYT_RS11720 - acetylornithine deacetylase, at 2,658,678 to 2,659,841 _RS11720 BPHYT_RS11725: BPHYT_RS11725 - hypothetical protein, at 2,659,834 to 2,660,511 _RS11725 BPHYT_RS11730: BPHYT_RS11730 - endoribonuclease, at 2,660,522 to 2,660,959 _RS11730 Position (kb) 2658 2659 2660Strain fitness (log2 ratio) -1 0 1at 2657.970 kb on + strand, within BPHYT_RS11715at 2658.186 kb on - strand, within BPHYT_RS11715

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO2 MOI 1
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2,657,970 + BPHYT_RS11715 0.61 +0.6
2,658,186 - BPHYT_RS11715 0.76 +0.3

Or see this region's nucleotide sequence