Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS11490
Experiment: 36hr PHYTO2 MOI 1
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 36hr PHYTO2 MOI 1 |
---|---|---|---|---|---|
remove | |||||
2,612,948 | + | BPHYT_RS11485 | 0.60 | -0.8 | |
2,613,167 | + | BPHYT_RS11485 | 0.80 | -0.1 | |
2,613,443 | + | -0.3 | |||
2,613,509 | + | +0.3 | |||
2,613,563 | + | -0.4 | |||
2,613,563 | + | -1.5 | |||
2,613,922 | + | -1.5 | |||
2,613,923 | - | +0.5 | |||
2,613,923 | - | +0.8 | |||
2,614,193 | - | BPHYT_RS11495 | 0.28 | -1.7 | |
2,614,193 | - | BPHYT_RS11495 | 0.28 | +2.4 | |
2,614,610 | - | BPHYT_RS11495 | 0.65 | +0.6 |
Or see this region's nucleotide sequence