Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS09670

Experiment: 36hr PHYTO2 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	36hr PHYTO2 MOI 1
2,191,674	-		BPHYT_RS09665	0.51	-0.6
2,191,952	+		BPHYT_RS09665	0.75	-0.5
2,192,272	+				-2.1
2,192,272	+				-0.1
2,192,277	-				+0.9
2,192,287	+				-0.5
2,192,287	+				+0.2
2,192,333	+				-0.7
2,192,333	+				-1.1
2,192,412	+				-1.2
2,192,473	+				+0.3
2,192,524	-				-0.5
2,192,524	-				-0.8
2,192,552	+				+1.6
2,192,552	+				-0.5
2,192,553	-				-0.4
2,192,553	-				-0.3
2,192,553	-				-0.8
2,192,695	+		BPHYT_RS09670	0.21	+0.0
2,192,695	+		BPHYT_RS09670	0.21	+0.8
2,192,696	-		BPHYT_RS09670	0.21	-0.8
2,192,762	+		BPHYT_RS09670	0.27	-2.0
2,192,765	+		BPHYT_RS09670	0.27	+0.2
2,192,766	-		BPHYT_RS09670	0.27	-2.0
2,192,766	-		BPHYT_RS09670	0.27	+1.3
2,192,939	+		BPHYT_RS09670	0.44	+0.4
2,192,939	+				+0.3
2,192,940	-		BPHYT_RS09670	0.44	-2.1
2,192,990	+		BPHYT_RS09670	0.48	-2.1
2,192,991	-		BPHYT_RS09670	0.48	-0.9
2,192,991	-		BPHYT_RS09670	0.48	+0.2
2,193,111	-		BPHYT_RS09670	0.60	-0.1
2,193,219	+		BPHYT_RS09670	0.70	-1.8
2,193,347	-		BPHYT_RS09670	0.82	+0.3
2,193,464	+				-0.8
2,193,464	+				+0.8
2,193,465	-				+1.6
2,193,465	-				-0.2
2,193,476	+				+0.5
2,193,526	+				+0.8
2,193,527	-				-0.3
2,193,850	+				+0.8
2,193,851	-				-0.0
2,193,889	-				-0.5
2,193,889	-				-1.8
2,194,126	+		BPHYT_RS09675	0.47	+0.2
2,194,127	-		BPHYT_RS09675	0.47	-2.2
2,194,150	-		BPHYT_RS09675	0.51	+0.0
2,194,171	+		BPHYT_RS09675	0.55	-1.3
2,194,171	+		BPHYT_RS09675	0.55	-0.5
2,194,268	+		BPHYT_RS09675	0.71	+0.8
2,194,269	-		BPHYT_RS09675	0.71	+0.2
2,194,500	-				+0.2
2,194,501	+				+0.7