Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS09665

Experiment: 36hr PHYTO2 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	36hr PHYTO2 MOI 1
2,190,094	+		BPHYT_RS09660	0.39	-0.2
2,190,145	+		BPHYT_RS09660	0.42	+1.7
2,190,145	+		BPHYT_RS09660	0.42	+0.8
2,190,146	-		BPHYT_RS09660	0.42	+1.5
2,190,146	-		BPHYT_RS09660	0.42	+2.2
2,190,146	-		BPHYT_RS09660	0.42	+1.6
2,190,355	+		BPHYT_RS09660	0.57	+1.2
2,190,475	-		BPHYT_RS09660	0.66	+1.6
2,190,475	-		BPHYT_RS09660	0.66	+2.6
2,190,478	+		BPHYT_RS09660	0.66	+1.8
2,190,479	-				+2.0
2,190,505	+		BPHYT_RS09660	0.68	+1.8
2,191,016	+				+0.4
2,191,016	+				+0.3
2,191,674	-		BPHYT_RS09665	0.51	-0.6
2,191,952	+		BPHYT_RS09665	0.75	-0.5
2,192,272	+				-2.1
2,192,272	+				-0.1
2,192,277	-				+0.9
2,192,287	+				-0.5
2,192,287	+				+0.2
2,192,333	+				-0.7
2,192,333	+				-1.1
2,192,412	+				-1.2
2,192,473	+				+0.3
2,192,524	-				-0.5
2,192,524	-				-0.8
2,192,552	+				+1.6
2,192,552	+				-0.5
2,192,553	-				-0.4
2,192,553	-				-0.3
2,192,553	-				-0.8
2,192,695	+		BPHYT_RS09670	0.21	+0.0
2,192,695	+		BPHYT_RS09670	0.21	+0.8
2,192,696	-		BPHYT_RS09670	0.21	-0.8
2,192,762	+		BPHYT_RS09670	0.27	-2.0
2,192,765	+		BPHYT_RS09670	0.27	+0.2
2,192,766	-		BPHYT_RS09670	0.27	-2.0
2,192,766	-		BPHYT_RS09670	0.27	+1.3
2,192,939	+		BPHYT_RS09670	0.44	+0.4
2,192,939	+				+0.3
2,192,940	-		BPHYT_RS09670	0.44	-2.1
2,192,990	+		BPHYT_RS09670	0.48	-2.1
2,192,991	-		BPHYT_RS09670	0.48	-0.9
2,192,991	-		BPHYT_RS09670	0.48	+0.2
2,193,111	-		BPHYT_RS09670	0.60	-0.1
2,193,219	+		BPHYT_RS09670	0.70	-1.8