Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS07870
Experiment: 36hr PHYTO2 MOI 1
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 36hr PHYTO2 MOI 1 |
---|---|---|---|---|---|
remove | |||||
1,792,309 | - | BPHYT_RS07865 | 0.78 | +2.3 | |
1,792,887 | - | BPHYT_RS07870 | 0.46 | -0.5 | |
1,792,986 | - | BPHYT_RS07870 | 0.59 | -2.6 | |
1,793,259 | - | -0.1 | |||
1,793,443 | - | -0.6 | |||
1,793,443 | - | +0.2 | |||
1,793,446 | + | -1.7 | |||
1,793,449 | - | +0.3 | |||
1,793,449 | - | -2.0 | |||
1,793,449 | - | -0.5 | |||
1,793,449 | - | +0.5 | |||
1,793,746 | - | BPHYT_RS07875 | 0.17 | -0.4 | |
1,793,964 | + | BPHYT_RS07875 | 0.28 | +0.5 | |
1,793,964 | + | BPHYT_RS07875 | 0.28 | +1.0 | |
1,793,964 | + | BPHYT_RS07875 | 0.28 | +0.7 | |
1,793,965 | - | BPHYT_RS07875 | 0.28 | -0.7 | |
1,793,994 | + | BPHYT_RS07875 | 0.30 | -0.1 | |
1,794,083 | - | BPHYT_RS07875 | 0.34 | +0.9 | |
1,794,264 | + | BPHYT_RS07875 | 0.43 | -1.1 | |
1,794,279 | + | BPHYT_RS07875 | 0.44 | +0.4 |
Or see this region's nucleotide sequence