Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS07500

Experiment: 36hr PHYTO2 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS07495 and BPHYT_RS07500 are separated by 117 nucleotidesBPHYT_RS07500 and BPHYT_RS07505 are separated by 67 nucleotides BPHYT_RS07495: BPHYT_RS07495 - LysR family transcriptional regulator, at 1,704,052 to 1,705,002 _RS07495 BPHYT_RS07500: BPHYT_RS07500 - amidohydrolase, at 1,705,120 to 1,706,292 _RS07500 BPHYT_RS07505: BPHYT_RS07505 - major facilitator transporter, at 1,706,360 to 1,707,721 _RS07505 Position (kb) 1705 1706 1707Strain fitness (log2 ratio) -3 -2 -1 0 1at 1705.213 kb on + strandat 1705.268 kb on - strand, within BPHYT_RS07500at 1705.615 kb on - strand, within BPHYT_RS07500at 1705.999 kb on + strand, within BPHYT_RS07500at 1706.161 kb on + strand, within BPHYT_RS07500at 1706.846 kb on + strand, within BPHYT_RS07505at 1707.029 kb on + strand, within BPHYT_RS07505at 1707.030 kb on - strand, within BPHYT_RS07505at 1707.031 kb on + strand, within BPHYT_RS07505

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO2 MOI 1
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1,705,213 + -1.9
1,705,268 - BPHYT_RS07500 0.13 +0.6
1,705,615 - BPHYT_RS07500 0.42 -2.8
1,705,999 + BPHYT_RS07500 0.75 -1.0
1,706,161 + BPHYT_RS07500 0.89 -0.4
1,706,846 + BPHYT_RS07505 0.36 -2.1
1,707,029 + BPHYT_RS07505 0.49 -2.0
1,707,030 - BPHYT_RS07505 0.49 -0.5
1,707,031 + BPHYT_RS07505 0.49 -1.1

Or see this region's nucleotide sequence