Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS05790

Experiment: 36hr PHYTO2 MOI 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS05775 and BPHYT_RS05780 overlap by 4 nucleotidesBPHYT_RS05780 and BPHYT_RS05785 overlap by 4 nucleotidesBPHYT_RS05785 and BPHYT_RS05790 are separated by 62 nucleotidesBPHYT_RS05790 and BPHYT_RS05795 are separated by 46 nucleotidesBPHYT_RS05795 and BPHYT_RS05800 are separated by 107 nucleotidesBPHYT_RS05800 and BPHYT_RS05805 are separated by 33 nucleotides BPHYT_RS05775: BPHYT_RS05775 - hypothetical protein, at 1,315,234 to 1,315,563 _RS05775 BPHYT_RS05780: BPHYT_RS05780 - hypothetical protein, at 1,315,560 to 1,315,871 _RS05780 BPHYT_RS05785: BPHYT_RS05785 - hypothetical protein, at 1,315,868 to 1,316,299 _RS05785 BPHYT_RS05790: BPHYT_RS05790 - hypothetical protein, at 1,316,362 to 1,317,291 _RS05790 BPHYT_RS05795: BPHYT_RS05795 - hypothetical protein, at 1,317,338 to 1,317,700 _RS05795 BPHYT_RS05800: BPHYT_RS05800 - hypothetical protein, at 1,317,808 to 1,318,089 _RS05800 BPHYT_RS05805: BPHYT_RS05805 - prophage tail length tape measure, at 1,318,123 to 1,323,246 _RS05805 Position (kb) 1316 1317 1318Strain fitness (log2 ratio) -1 0 1 2 3at 1315.376 kb on - strand, within BPHYT_RS05775at 1315.393 kb on + strand, within BPHYT_RS05775at 1315.722 kb on + strand, within BPHYT_RS05780at 1315.722 kb on + strand, within BPHYT_RS05780at 1315.735 kb on - strand, within BPHYT_RS05780at 1316.684 kb on - strand, within BPHYT_RS05790at 1316.834 kb on - strand, within BPHYT_RS05790at 1316.990 kb on - strand, within BPHYT_RS05790at 1316.990 kb on - strand, within BPHYT_RS05790at 1317.397 kb on + strand, within BPHYT_RS05795at 1317.652 kb on - strand, within BPHYT_RS05795at 1317.662 kb on + strand, within BPHYT_RS05795at 1317.663 kb on - strand, within BPHYT_RS05795at 1317.908 kb on - strand, within BPHYT_RS05800at 1317.944 kb on - strand, within BPHYT_RS05800at 1317.958 kb on + strand, within BPHYT_RS05800at 1318.144 kb on - strandat 1318.144 kb on - strandat 1318.146 kb on + strandat 1318.147 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO2 MOI 1
remove
1,315,376 - BPHYT_RS05775 0.43 -0.8
1,315,393 + BPHYT_RS05775 0.48 -1.7
1,315,722 + BPHYT_RS05780 0.52 -0.2
1,315,722 + BPHYT_RS05780 0.52 +0.9
1,315,735 - BPHYT_RS05780 0.56 +1.0
1,316,684 - BPHYT_RS05790 0.35 -0.7
1,316,834 - BPHYT_RS05790 0.51 +0.2
1,316,990 - BPHYT_RS05790 0.68 +0.9
1,316,990 - BPHYT_RS05790 0.68 +0.5
1,317,397 + BPHYT_RS05795 0.16 -0.6
1,317,652 - BPHYT_RS05795 0.87 +0.6
1,317,662 + BPHYT_RS05795 0.89 +3.5
1,317,663 - BPHYT_RS05795 0.90 +1.3
1,317,908 - BPHYT_RS05800 0.35 +0.3
1,317,944 - BPHYT_RS05800 0.48 +1.1
1,317,958 + BPHYT_RS05800 0.53 +0.5
1,318,144 - -0.5
1,318,144 - +1.3
1,318,146 + +1.8
1,318,147 - +0.8

Or see this region's nucleotide sequence