Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS03440

Experiment: 36hr PHYTO2 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS03430 and BPHYT_RS03435 are separated by 279 nucleotidesBPHYT_RS03435 and BPHYT_RS03440 are separated by 68 nucleotidesBPHYT_RS03440 and BPHYT_RS03445 are separated by 8 nucleotidesBPHYT_RS03445 and BPHYT_RS03450 are separated by 409 nucleotides BPHYT_RS03430: BPHYT_RS03430 - major facilitator transporter, at 774,064 to 775,341 _RS03430 BPHYT_RS03435: BPHYT_RS03435 - polyisoprenoid-binding protein, at 775,621 to 776,190 _RS03435 BPHYT_RS03440: BPHYT_RS03440 - polyisoprenoid-binding protein, at 776,259 to 776,822 _RS03440 BPHYT_RS03445: BPHYT_RS03445 - cytochrome B561, at 776,831 to 777,391 _RS03445 BPHYT_RS03450: BPHYT_RS03450 - paraquat-inducible protein A, at 777,801 to 778,586 _RS03450 Position (kb) 776 777Strain fitness (log2 ratio) -2 -1 0 1 2at 775.438 kb on + strandat 775.622 kb on + strandat 775.622 kb on + strandat 775.623 kb on - strandat 775.676 kb on + strandat 775.701 kb on - strand, within BPHYT_RS03435at 775.869 kb on + strand, within BPHYT_RS03435at 775.881 kb on + strand, within BPHYT_RS03435at 775.882 kb on - strand, within BPHYT_RS03435at 775.884 kb on - strand, within BPHYT_RS03435at 775.884 kb on - strand, within BPHYT_RS03435at 775.884 kb on - strand, within BPHYT_RS03435at 775.884 kb on - strand, within BPHYT_RS03435at 775.884 kb on - strand, within BPHYT_RS03435at 775.884 kb on - strand, within BPHYT_RS03435at 775.884 kb on - strand, within BPHYT_RS03435at 776.100 kb on - strand, within BPHYT_RS03435at 776.124 kb on - strand, within BPHYT_RS03435at 776.124 kb on - strand, within BPHYT_RS03435at 776.124 kb on - strand, within BPHYT_RS03435at 776.570 kb on - strand, within BPHYT_RS03440at 776.570 kb on - strand, within BPHYT_RS03440at 776.591 kb on - strand, within BPHYT_RS03440at 776.591 kb on - strand, within BPHYT_RS03440at 776.801 kb on - strandat 776.806 kb on + strandat 776.934 kb on + strand, within BPHYT_RS03445at 777.022 kb on - strand, within BPHYT_RS03445at 777.022 kb on - strand, within BPHYT_RS03445at 777.051 kb on + strand, within BPHYT_RS03445at 777.051 kb on + strand, within BPHYT_RS03445at 777.057 kb on + strand, within BPHYT_RS03445at 777.090 kb on + strand, within BPHYT_RS03445at 777.090 kb on + strand, within BPHYT_RS03445at 777.241 kb on - strand, within BPHYT_RS03445at 777.346 kb on + strandat 777.346 kb on + strandat 777.346 kb on + strandat 777.355 kb on - strandat 777.355 kb on - strandat 777.409 kb on + strandat 777.410 kb on - strandat 777.410 kb on - strandat 777.474 kb on + strandat 777.474 kb on + strandat 777.478 kb on - strandat 777.478 kb on - strandat 777.501 kb on + strandat 777.521 kb on - strandat 777.521 kb on - strandat 777.521 kb on - strandat 777.521 kb on - strandat 777.545 kb on + strandat 777.642 kb on + strandat 777.642 kb on + strandat 777.642 kb on + strandat 777.643 kb on - strandat 777.725 kb on + strandat 777.728 kb on + strandat 777.728 kb on + strandat 777.728 kb on + strandat 777.728 kb on + strandat 777.729 kb on - strandat 777.729 kb on - strandat 777.729 kb on - strandat 777.739 kb on + strandat 777.753 kb on + strandat 777.754 kb on - strandat 777.754 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO2 MOI 1
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775,438 + -1.0
775,622 + -0.4
775,622 + -0.2
775,623 - -0.1
775,676 + -1.3
775,701 - BPHYT_RS03435 0.14 -0.6
775,869 + BPHYT_RS03435 0.44 +0.2
775,881 + BPHYT_RS03435 0.46 -2.0
775,882 - BPHYT_RS03435 0.46 -1.0
775,884 - BPHYT_RS03435 0.46 -0.8
775,884 - BPHYT_RS03435 0.46 -0.6
775,884 - BPHYT_RS03435 0.46 -0.2
775,884 - BPHYT_RS03435 0.46 -0.2
775,884 - BPHYT_RS03435 0.46 -0.2
775,884 - BPHYT_RS03435 0.46 -1.0
775,884 - BPHYT_RS03435 0.46 -0.6
776,100 - BPHYT_RS03435 0.84 -0.7
776,124 - BPHYT_RS03435 0.88 -0.1
776,124 - BPHYT_RS03435 0.88 -1.3
776,124 - BPHYT_RS03435 0.88 +0.2
776,570 - BPHYT_RS03440 0.55 +0.3
776,570 - BPHYT_RS03440 0.55 -1.1
776,591 - BPHYT_RS03440 0.59 -1.2
776,591 - BPHYT_RS03440 0.59 -0.2
776,801 - -1.4
776,806 + -1.2
776,934 + BPHYT_RS03445 0.18 -1.8
777,022 - BPHYT_RS03445 0.34 +0.2
777,022 - BPHYT_RS03445 0.34 +0.8
777,051 + BPHYT_RS03445 0.39 +0.3
777,051 + BPHYT_RS03445 0.39 -2.5
777,057 + BPHYT_RS03445 0.40 -0.6
777,090 + BPHYT_RS03445 0.46 -0.2
777,090 + BPHYT_RS03445 0.46 +0.1
777,241 - BPHYT_RS03445 0.73 -1.4
777,346 + -1.5
777,346 + +0.8
777,346 + -2.3
777,355 - +2.0
777,355 - -0.6
777,409 + -0.6
777,410 - +0.8
777,410 - -0.4
777,474 + +0.3
777,474 + -2.1
777,478 - +0.1
777,478 - +0.1
777,501 + +0.4
777,521 - +0.7
777,521 - +0.3
777,521 - +0.7
777,521 - -0.6
777,545 + -0.3
777,642 + +0.8
777,642 + -0.4
777,642 + -0.1
777,643 - +1.2
777,725 + -2.6
777,728 + +1.4
777,728 + +0.4
777,728 + -0.1
777,728 + -0.6
777,729 - +0.9
777,729 - +1.4
777,729 - +1.4
777,739 + -0.2
777,753 + -2.7
777,754 - -1.0
777,754 - +1.2

Or see this region's nucleotide sequence