Experiment: 36hr PHYTO2 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03095 and BPHYT_RS03100 overlap by 31 nucleotides BPHYT_RS03100 and BPHYT_RS03105 are separated by 137 nucleotides BPHYT_RS03105 and BPHYT_RS03110 are separated by 31 nucleotides BPHYT_RS03110 and BPHYT_RS03115 are separated by 125 nucleotides
BPHYT_RS03095: BPHYT_RS03095 - alpha/beta hydrolase, at 692,694 to 693,650
_RS03095
BPHYT_RS03100: BPHYT_RS03100 - peptidase, at 693,620 to 694,462
_RS03100
BPHYT_RS03105: BPHYT_RS03105 - DSBA oxidoreductase, at 694,600 to 696,195
_RS03105
BPHYT_RS03110: BPHYT_RS03110 - MarR family transcriptional regulator, at 696,227 to 696,736
_RS03110
BPHYT_RS03115: BPHYT_RS03115 - amino acid deaminase, at 696,862 to 698,139
_RS03115
Position (kb) 694
695
696
697 Strain fitness (log2 ratio) -2
-1
0
1
2 at 693.651 kb on + strand at 693.652 kb on - strand at 693.679 kb on - strand at 693.749 kb on - strand, within BPHYT_RS03100 at 693.951 kb on + strand, within BPHYT_RS03100 at 694.537 kb on + strand at 694.537 kb on + strand at 694.556 kb on - strand at 694.644 kb on - strand at 694.738 kb on - strand at 694.771 kb on + strand, within BPHYT_RS03105 at 694.792 kb on + strand, within BPHYT_RS03105 at 694.793 kb on - strand at 694.793 kb on - strand, within BPHYT_RS03105 at 694.843 kb on + strand, within BPHYT_RS03105 at 694.846 kb on + strand, within BPHYT_RS03105 at 695.046 kb on - strand, within BPHYT_RS03105 at 695.113 kb on + strand, within BPHYT_RS03105 at 695.113 kb on + strand, within BPHYT_RS03105 at 695.113 kb on + strand, within BPHYT_RS03105 at 695.114 kb on - strand, within BPHYT_RS03105 at 695.491 kb on + strand, within BPHYT_RS03105 at 695.491 kb on + strand at 695.491 kb on + strand, within BPHYT_RS03105 at 695.637 kb on + strand, within BPHYT_RS03105 at 695.638 kb on + strand, within BPHYT_RS03105 at 695.638 kb on + strand, within BPHYT_RS03105 at 695.638 kb on + strand, within BPHYT_RS03105 at 695.638 kb on + strand, within BPHYT_RS03105 at 695.639 kb on - strand, within BPHYT_RS03105 at 695.892 kb on + strand, within BPHYT_RS03105 at 695.892 kb on + strand, within BPHYT_RS03105 at 695.892 kb on + strand, within BPHYT_RS03105 at 695.893 kb on - strand, within BPHYT_RS03105 at 695.893 kb on - strand, within BPHYT_RS03105 at 695.896 kb on + strand, within BPHYT_RS03105 at 695.896 kb on + strand, within BPHYT_RS03105 at 695.897 kb on - strand, within BPHYT_RS03105 at 695.997 kb on + strand, within BPHYT_RS03105 at 696.529 kb on + strand at 696.530 kb on - strand, within BPHYT_RS03110 at 696.530 kb on - strand, within BPHYT_RS03110 at 696.897 kb on - strand at 697.013 kb on + strand, within BPHYT_RS03115 at 697.014 kb on - strand, within BPHYT_RS03115 at 697.014 kb on - strand, within BPHYT_RS03115 at 697.095 kb on - strand, within BPHYT_RS03115 at 697.148 kb on - strand, within BPHYT_RS03115 at 697.148 kb on - strand, within BPHYT_RS03115 at 697.190 kb on + strand, within BPHYT_RS03115 at 697.190 kb on + strand, within BPHYT_RS03115 at 697.190 kb on + strand, within BPHYT_RS03115 at 697.191 kb on - strand, within BPHYT_RS03115 at 697.191 kb on - strand, within BPHYT_RS03115 at 697.191 kb on - strand, within BPHYT_RS03115
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO2 MOI 1 remove 693,651 + -0.8 693,652 - +0.2 693,679 - +0.8 693,749 - BPHYT_RS03100 0.15 -0.4 693,951 + BPHYT_RS03100 0.39 -0.8 694,537 + +0.1 694,537 + -0.3 694,556 - -0.8 694,644 - +0.1 694,738 - -1.3 694,771 + BPHYT_RS03105 0.11 +2.0 694,792 + BPHYT_RS03105 0.12 -1.2 694,793 - +1.3 694,793 - BPHYT_RS03105 0.12 +0.2 694,843 + BPHYT_RS03105 0.15 +0.2 694,846 + BPHYT_RS03105 0.15 +0.3 695,046 - BPHYT_RS03105 0.28 +0.1 695,113 + BPHYT_RS03105 0.32 +0.1 695,113 + BPHYT_RS03105 0.32 +0.5 695,113 + BPHYT_RS03105 0.32 -0.3 695,114 - BPHYT_RS03105 0.32 -0.7 695,491 + BPHYT_RS03105 0.56 +0.3 695,491 + -0.0 695,491 + BPHYT_RS03105 0.56 +0.4 695,637 + BPHYT_RS03105 0.65 -0.4 695,638 + BPHYT_RS03105 0.65 -1.5 695,638 + BPHYT_RS03105 0.65 +1.2 695,638 + BPHYT_RS03105 0.65 +0.3 695,638 + BPHYT_RS03105 0.65 +0.9 695,639 - BPHYT_RS03105 0.65 +2.3 695,892 + BPHYT_RS03105 0.81 +1.0 695,892 + BPHYT_RS03105 0.81 -1.1 695,892 + BPHYT_RS03105 0.81 +0.4 695,893 - BPHYT_RS03105 0.81 -0.0 695,893 - BPHYT_RS03105 0.81 +0.7 695,896 + BPHYT_RS03105 0.81 -1.6 695,896 + BPHYT_RS03105 0.81 +0.7 695,897 - BPHYT_RS03105 0.81 -1.6 695,997 + BPHYT_RS03105 0.88 +0.5 696,529 + +1.7 696,530 - BPHYT_RS03110 0.59 -0.9 696,530 - BPHYT_RS03110 0.59 +1.3 696,897 - -0.8 697,013 + BPHYT_RS03115 0.12 -0.5 697,014 - BPHYT_RS03115 0.12 -1.9 697,014 - BPHYT_RS03115 0.12 -0.1 697,095 - BPHYT_RS03115 0.18 +0.1 697,148 - BPHYT_RS03115 0.22 -0.5 697,148 - BPHYT_RS03115 0.22 +0.4 697,190 + BPHYT_RS03115 0.26 +0.8 697,190 + BPHYT_RS03115 0.26 -0.9 697,190 + BPHYT_RS03115 0.26 -1.2 697,191 - BPHYT_RS03115 0.26 -0.2 697,191 - BPHYT_RS03115 0.26 -0.5 697,191 - BPHYT_RS03115 0.26 +0.5
Or see this region's nucleotide sequence