Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS02440

Experiment: 36hr PHYTO2 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS02430 and BPHYT_RS02435 are separated by 98 nucleotidesBPHYT_RS02435 and BPHYT_RS02440 are separated by 198 nucleotidesBPHYT_RS02440 and BPHYT_RS02445 are separated by 13 nucleotides BPHYT_RS02430: BPHYT_RS02430 - XRE family transcriptional regulator, at 552,604 to 553,572 _RS02430 BPHYT_RS02435: BPHYT_RS02435 - hypothetical protein, at 553,671 to 553,997 _RS02435 BPHYT_RS02440: BPHYT_RS02440 - octanoyltransferase, at 554,196 to 554,921 _RS02440 BPHYT_RS02445: BPHYT_RS02445 - lipoyl synthase, at 554,935 to 555,942 _RS02445 Position (kb) 554 555Strain fitness (log2 ratio) -1 0 1 2at 553.627 kb on - strandat 553.826 kb on + strand, within BPHYT_RS02435at 553.826 kb on + strand, within BPHYT_RS02435at 553.971 kb on - strandat 553.971 kb on - strandat 553.971 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO2 MOI 1
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553,627 - +0.1
553,826 + BPHYT_RS02435 0.47 +2.4
553,826 + BPHYT_RS02435 0.47 -1.5
553,971 - +1.2
553,971 - +0.0
553,971 - -0.2

Or see this region's nucleotide sequence