Experiment: 36hr PHYTO2 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01870 and BPHYT_RS01875 are separated by 284 nucleotides BPHYT_RS01875 and BPHYT_RS01880 are separated by 252 nucleotides
BPHYT_RS01870: BPHYT_RS01870 - 6-aminohexanoate-cyclic-dimer hydrolase, at 424,698 to 426,218
_RS01870
BPHYT_RS01875: BPHYT_RS01875 - carboxymethylenebutenolidase, at 426,503 to 427,201
_RS01875
BPHYT_RS01880: BPHYT_RS01880 - nitronate monooxygenase, at 427,454 to 428,554
_RS01880
Position (kb) 426
427
428 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 425.694 kb on - strand, within BPHYT_RS01870 at 425.792 kb on + strand, within BPHYT_RS01870 at 425.792 kb on + strand, within BPHYT_RS01870 at 425.793 kb on - strand, within BPHYT_RS01870 at 425.794 kb on + strand, within BPHYT_RS01870 at 425.794 kb on + strand, within BPHYT_RS01870 at 425.795 kb on - strand, within BPHYT_RS01870 at 426.070 kb on + strand at 426.168 kb on + strand at 426.169 kb on - strand at 426.361 kb on + strand at 426.370 kb on + strand at 426.370 kb on + strand at 426.371 kb on - strand at 426.504 kb on + strand at 426.567 kb on + strand at 426.567 kb on + strand at 426.568 kb on - strand at 426.612 kb on + strand at 426.612 kb on + strand, within BPHYT_RS01875 at 426.613 kb on - strand, within BPHYT_RS01875 at 426.772 kb on - strand, within BPHYT_RS01875 at 426.772 kb on - strand, within BPHYT_RS01875 at 426.813 kb on + strand, within BPHYT_RS01875 at 426.813 kb on + strand, within BPHYT_RS01875 at 426.975 kb on + strand, within BPHYT_RS01875 at 426.975 kb on + strand, within BPHYT_RS01875 at 427.070 kb on - strand, within BPHYT_RS01875 at 427.144 kb on - strand at 427.908 kb on + strand, within BPHYT_RS01880 at 427.909 kb on - strand, within BPHYT_RS01880 at 427.910 kb on + strand, within BPHYT_RS01880 at 427.910 kb on + strand, within BPHYT_RS01880 at 427.910 kb on + strand, within BPHYT_RS01880 at 427.910 kb on + strand, within BPHYT_RS01880 at 427.910 kb on + strand, within BPHYT_RS01880 at 427.914 kb on + strand, within BPHYT_RS01880 at 427.914 kb on + strand, within BPHYT_RS01880 at 427.914 kb on + strand, within BPHYT_RS01880 at 427.914 kb on + strand, within BPHYT_RS01880 at 427.914 kb on + strand, within BPHYT_RS01880 at 427.914 kb on + strand, within BPHYT_RS01880 at 427.914 kb on + strand, within BPHYT_RS01880 at 427.915 kb on - strand, within BPHYT_RS01880 at 427.915 kb on - strand, within BPHYT_RS01880 at 427.915 kb on - strand, within BPHYT_RS01880 at 427.917 kb on + strand, within BPHYT_RS01880 at 427.918 kb on - strand, within BPHYT_RS01880
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO2 MOI 1 remove 425,694 - BPHYT_RS01870 0.65 -1.3 425,792 + BPHYT_RS01870 0.72 +0.4 425,792 + BPHYT_RS01870 0.72 +0.0 425,793 - BPHYT_RS01870 0.72 +0.3 425,794 + BPHYT_RS01870 0.72 +0.7 425,794 + BPHYT_RS01870 0.72 +1.0 425,795 - BPHYT_RS01870 0.72 -0.8 426,070 + +0.6 426,168 + +0.4 426,169 - +0.3 426,361 + -0.8 426,370 + +0.1 426,370 + -0.8 426,371 - +0.4 426,504 + -3.0 426,567 + -1.2 426,567 + -0.2 426,568 - -1.1 426,612 + +2.1 426,612 + BPHYT_RS01875 0.16 -0.4 426,613 - BPHYT_RS01875 0.16 -1.5 426,772 - BPHYT_RS01875 0.38 +0.3 426,772 - BPHYT_RS01875 0.38 -0.9 426,813 + BPHYT_RS01875 0.44 -2.0 426,813 + BPHYT_RS01875 0.44 -1.1 426,975 + BPHYT_RS01875 0.68 +2.0 426,975 + BPHYT_RS01875 0.68 -1.0 427,070 - BPHYT_RS01875 0.81 -0.6 427,144 - -0.2 427,908 + BPHYT_RS01880 0.41 -0.8 427,909 - BPHYT_RS01880 0.41 -1.0 427,910 + BPHYT_RS01880 0.41 -1.9 427,910 + BPHYT_RS01880 0.41 +0.3 427,910 + BPHYT_RS01880 0.41 -0.8 427,910 + BPHYT_RS01880 0.41 -0.5 427,910 + BPHYT_RS01880 0.41 -0.1 427,914 + BPHYT_RS01880 0.42 +0.3 427,914 + BPHYT_RS01880 0.42 -0.8 427,914 + BPHYT_RS01880 0.42 -1.5 427,914 + BPHYT_RS01880 0.42 -0.1 427,914 + BPHYT_RS01880 0.42 +0.2 427,914 + BPHYT_RS01880 0.42 -0.0 427,914 + BPHYT_RS01880 0.42 +1.2 427,915 - BPHYT_RS01880 0.42 +0.5 427,915 - BPHYT_RS01880 0.42 +0.1 427,915 - BPHYT_RS01880 0.42 +0.1 427,917 + BPHYT_RS01880 0.42 -1.2 427,918 - BPHYT_RS01880 0.42 +0.2
Or see this region's nucleotide sequence