Experiment: 36hr PHYTO2 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01095 and BPHYT_RS01100 are separated by 9 nucleotides BPHYT_RS01100 and BPHYT_RS01105 overlap by 8 nucleotides BPHYT_RS01105 and BPHYT_RS01110 are separated by 114 nucleotides BPHYT_RS01110 and BPHYT_RS01115 are separated by 195 nucleotides BPHYT_RS01115 and BPHYT_RS01120 are separated by 139 nucleotides
BPHYT_RS01095: BPHYT_RS01095 - hypothetical protein, at 254,041 to 254,490
_RS01095
BPHYT_RS01100: BPHYT_RS01100 - protein mobD, at 254,500 to 255,204
_RS01100
BPHYT_RS01105: BPHYT_RS01105 - hypothetical protein, at 255,197 to 255,916
_RS01105
BPHYT_RS01110: BPHYT_RS01110 - hypothetical protein, at 256,031 to 256,237
_RS01110
BPHYT_RS01115: BPHYT_RS01115 - hypothetical protein, at 256,433 to 256,678
_RS01115
BPHYT_RS01120: BPHYT_RS01120 - plasmid partitioning protein ParB, at 256,818 to 258,902
_RS01120
Position (kb) 255
256 Strain fitness (log2 ratio) -2
-1
0
1 at 254.197 kb on + strand, within BPHYT_RS01095 at 254.536 kb on + strand at 254.536 kb on + strand at 254.537 kb on - strand at 254.537 kb on - strand at 254.537 kb on - strand at 254.623 kb on - strand, within BPHYT_RS01100 at 254.672 kb on + strand at 254.673 kb on - strand, within BPHYT_RS01100 at 254.740 kb on + strand, within BPHYT_RS01100 at 254.962 kb on + strand, within BPHYT_RS01100 at 254.963 kb on - strand, within BPHYT_RS01100 at 254.965 kb on + strand, within BPHYT_RS01100 at 254.966 kb on - strand, within BPHYT_RS01100 at 254.966 kb on - strand, within BPHYT_RS01100 at 254.993 kb on - strand, within BPHYT_RS01100 at 255.102 kb on - strand, within BPHYT_RS01100 at 255.166 kb on + strand at 255.167 kb on - strand at 255.167 kb on - strand at 255.167 kb on - strand at 255.371 kb on + strand, within BPHYT_RS01105 at 255.374 kb on + strand, within BPHYT_RS01105 at 255.386 kb on + strand, within BPHYT_RS01105 at 255.387 kb on - strand, within BPHYT_RS01105 at 256.566 kb on + strand, within BPHYT_RS01115 at 256.584 kb on + strand, within BPHYT_RS01115 at 256.617 kb on + strand, within BPHYT_RS01115 at 256.681 kb on + strand at 256.681 kb on + strand at 256.681 kb on + strand at 256.712 kb on - strand at 256.809 kb on + strand at 256.810 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO2 MOI 1 remove 254,197 + BPHYT_RS01095 0.35 -0.2 254,536 + +0.4 254,536 + +0.9 254,537 - -0.1 254,537 - -1.0 254,537 - +0.4 254,623 - BPHYT_RS01100 0.17 -0.5 254,672 + -0.2 254,673 - BPHYT_RS01100 0.25 -0.6 254,740 + BPHYT_RS01100 0.34 -0.1 254,962 + BPHYT_RS01100 0.66 -0.6 254,963 - BPHYT_RS01100 0.66 +0.0 254,965 + BPHYT_RS01100 0.66 -1.3 254,966 - BPHYT_RS01100 0.66 -0.1 254,966 - BPHYT_RS01100 0.66 +0.0 254,993 - BPHYT_RS01100 0.70 -0.8 255,102 - BPHYT_RS01100 0.85 +0.6 255,166 + +0.4 255,167 - +0.8 255,167 - -2.1 255,167 - +0.2 255,371 + BPHYT_RS01105 0.24 +1.3 255,374 + BPHYT_RS01105 0.25 +0.7 255,386 + BPHYT_RS01105 0.26 +0.6 255,387 - BPHYT_RS01105 0.26 +0.4 256,566 + BPHYT_RS01115 0.54 -0.9 256,584 + BPHYT_RS01115 0.61 +0.5 256,617 + BPHYT_RS01115 0.75 -1.4 256,681 + +0.2 256,681 + -0.8 256,681 + -0.7 256,712 - -0.4 256,809 + -1.7 256,810 - +0.6
Or see this region's nucleotide sequence