Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS00200

Experiment: 36hr PHYTO2 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	36hr PHYTO2 MOI 1
52,250	+		BPHYT_RS00195	0.89	-0.2
52,253	+		BPHYT_RS00195	0.89	+0.1
52,253	+		BPHYT_RS00195	0.89	-0.2
52,254	-		BPHYT_RS00195	0.90	+0.2
52,254	-		BPHYT_RS00195	0.90	-1.9
52,254	-		BPHYT_RS00195	0.90	+0.1
52,501	-				-0.8
52,597	-				-1.8
52,616	-				-0.8
52,729	+				-0.5
52,729	+				+0.5
52,759	+				+3.2
52,759	+				-0.3
52,983	-				-1.3
52,993	+				+0.8
52,993	+				+0.8
53,276	-				-1.2
53,322	+		BPHYT_RS00200	0.12	-0.8
53,323	-		BPHYT_RS00200	0.12	-0.4
53,424	+		BPHYT_RS00200	0.20	-1.1
53,536	+		BPHYT_RS00200	0.28	-2.2
53,537	-		BPHYT_RS00200	0.28	-0.7
53,554	-		BPHYT_RS00200	0.29	+0.2
53,699	+		BPHYT_RS00200	0.39	+0.4
53,699	+		BPHYT_RS00200	0.39	-1.0
53,699	+		BPHYT_RS00200	0.39	+0.2
53,792	+		BPHYT_RS00200	0.46	-0.0
53,875	+		BPHYT_RS00200	0.52	+0.6
53,876	-		BPHYT_RS00200	0.52	-0.1
54,094	+		BPHYT_RS00200	0.67	+0.6
54,152	+		BPHYT_RS00200	0.71	-0.2
54,152	+		BPHYT_RS00200	0.71	-0.2
54,248	-		BPHYT_RS00200	0.78	+0.2
54,566	-				-0.0
54,566	-				-0.5
54,566	-				+2.1
54,671	+				+0.2
54,708	-				-0.2
54,715	+				+0.2
54,756	-				-1.0
55,202	+		BPHYT_RS00205	0.61	-1.3
55,231	-		BPHYT_RS00205	0.65	-0.4
55,450	-				-1.6
55,460	+				-0.1
55,483	+				+0.8
55,483	+				+0.1
55,484	-				+0.6
55,484	-				+0.8
55,484	-				+0.4
55,494	+				+1.1