Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS35475

Experiment: 36hr PHYTO MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS35465 and BPHYT_RS35470 are separated by 27 nucleotidesBPHYT_RS35470 and BPHYT_RS35475 overlap by 4 nucleotidesBPHYT_RS35475 and BPHYT_RS35480 overlap by 4 nucleotides BPHYT_RS35465: BPHYT_RS35465 - enoyl-CoA hydratase, at 3,557,335 to 3,558,186 _RS35465 BPHYT_RS35470: BPHYT_RS35470 - MarR family transcriptional regulator, at 3,558,214 to 3,558,777 _RS35470 BPHYT_RS35475: BPHYT_RS35475 - 3-hydroxyacyl-CoA dehydrogenase, at 3,558,774 to 3,559,547 _RS35475 BPHYT_RS35480: BPHYT_RS35480 - salicylyl-CoA 5-hydroxylase, at 3,559,544 to 3,561,916 _RS35480 Position (kb) 3558 3559 3560Strain fitness (log2 ratio) -1 0 1at 3557.996 kb on + strand, within BPHYT_RS35465at 3557.997 kb on - strand, within BPHYT_RS35465at 3560.304 kb on + strand, within BPHYT_RS35480at 3560.305 kb on - strand, within BPHYT_RS35480

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO MOI 0.1
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3,557,996 + BPHYT_RS35465 0.78 -1.3
3,557,997 - BPHYT_RS35465 0.78 -0.3
3,560,304 + BPHYT_RS35480 0.32 -0.2
3,560,305 - BPHYT_RS35480 0.32 +1.1

Or see this region's nucleotide sequence