Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS29945

Experiment: 36hr PHYTO MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS29940 and BPHYT_RS29945 are separated by 429 nucleotidesBPHYT_RS29945 and BPHYT_RS29950 are separated by 281 nucleotides BPHYT_RS29940: BPHYT_RS29940 - hemagglutinin, at 2,268,863 to 2,271,757 _RS29940 BPHYT_RS29945: BPHYT_RS29945 - histidine kinase, at 2,272,187 to 2,273,407 _RS29945 BPHYT_RS29950: BPHYT_RS29950 - hypothetical protein, at 2,273,689 to 2,274,114 _RS29950 Position (kb) 2272 2273 2274Strain fitness (log2 ratio) -1 0 1at 2271.713 kb on - strandat 2271.740 kb on - strandat 2271.841 kb on + strandat 2271.855 kb on + strandat 2271.998 kb on - strandat 2272.476 kb on + strand, within BPHYT_RS29945at 2272.932 kb on + strand, within BPHYT_RS29945at 2273.391 kb on - strandat 2273.440 kb on + strandat 2273.598 kb on + strandat 2273.599 kb on - strandat 2273.861 kb on + strand, within BPHYT_RS29950at 2274.229 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO MOI 0.1
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2,271,713 - -1.3
2,271,740 - +0.5
2,271,841 + +0.8
2,271,855 + +0.4
2,271,998 - -0.7
2,272,476 + BPHYT_RS29945 0.24 -1.0
2,272,932 + BPHYT_RS29945 0.61 -0.5
2,273,391 - -0.7
2,273,440 + +0.6
2,273,598 + -0.8
2,273,599 - +0.5
2,273,861 + BPHYT_RS29950 0.40 -0.2
2,274,229 - -0.6

Or see this region's nucleotide sequence