Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS29940

Experiment: 36hr PHYTO MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS29930 and BPHYT_RS29935 are separated by 10 nucleotidesBPHYT_RS29935 and BPHYT_RS29940 are separated by 110 nucleotidesBPHYT_RS29940 and BPHYT_RS29945 are separated by 429 nucleotides BPHYT_RS29930: BPHYT_RS29930 - MFS transporter, at 2,267,213 to 2,268,616 _RS29930 BPHYT_RS29935: BPHYT_RS29935 - oxalate:formate antiporter, at 2,268,627 to 2,268,752 _RS29935 BPHYT_RS29940: BPHYT_RS29940 - hemagglutinin, at 2,268,863 to 2,271,757 _RS29940 BPHYT_RS29945: BPHYT_RS29945 - histidine kinase, at 2,272,187 to 2,273,407 _RS29945 Position (kb) 2268 2269 2270 2271 2272Strain fitness (log2 ratio) -2 -1 0 1at 2267.968 kb on + strand, within BPHYT_RS29930at 2268.237 kb on - strand, within BPHYT_RS29930at 2268.237 kb on - strand, within BPHYT_RS29930at 2268.239 kb on + strand, within BPHYT_RS29930at 2268.239 kb on + strand, within BPHYT_RS29930at 2268.239 kb on + strand, within BPHYT_RS29930at 2268.240 kb on - strand, within BPHYT_RS29930at 2268.240 kb on - strand, within BPHYT_RS29930at 2268.293 kb on + strand, within BPHYT_RS29930at 2268.315 kb on - strand, within BPHYT_RS29930at 2268.315 kb on - strand, within BPHYT_RS29930at 2268.446 kb on + strand, within BPHYT_RS29930at 2268.531 kb on + strandat 2268.684 kb on + strand, within BPHYT_RS29935at 2268.684 kb on + strand, within BPHYT_RS29935at 2268.684 kb on + strand, within BPHYT_RS29935at 2268.685 kb on - strand, within BPHYT_RS29935at 2268.685 kb on - strand, within BPHYT_RS29935at 2268.685 kb on - strand, within BPHYT_RS29935at 2268.720 kb on - strand, within BPHYT_RS29935at 2268.874 kb on - strandat 2269.341 kb on + strand, within BPHYT_RS29940at 2269.461 kb on - strand, within BPHYT_RS29940at 2269.461 kb on - strand, within BPHYT_RS29940at 2269.693 kb on + strand, within BPHYT_RS29940at 2269.695 kb on + strand, within BPHYT_RS29940at 2269.695 kb on + strand, within BPHYT_RS29940at 2269.696 kb on - strand, within BPHYT_RS29940at 2269.696 kb on - strand, within BPHYT_RS29940at 2269.975 kb on + strand, within BPHYT_RS29940at 2269.976 kb on - strand, within BPHYT_RS29940at 2270.043 kb on + strand, within BPHYT_RS29940at 2270.558 kb on - strand, within BPHYT_RS29940at 2270.793 kb on + strand, within BPHYT_RS29940at 2270.814 kb on + strand, within BPHYT_RS29940at 2270.815 kb on - strand, within BPHYT_RS29940at 2271.713 kb on - strandat 2271.740 kb on - strandat 2271.841 kb on + strandat 2271.855 kb on + strandat 2271.998 kb on - strandat 2272.476 kb on + strand, within BPHYT_RS29945

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO MOI 0.1
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2,267,968 + BPHYT_RS29930 0.54 -0.4
2,268,237 - BPHYT_RS29930 0.73 -0.4
2,268,237 - BPHYT_RS29930 0.73 -1.1
2,268,239 + BPHYT_RS29930 0.73 -0.9
2,268,239 + BPHYT_RS29930 0.73 +0.0
2,268,239 + BPHYT_RS29930 0.73 +0.0
2,268,240 - BPHYT_RS29930 0.73 -0.0
2,268,240 - BPHYT_RS29930 0.73 +0.0
2,268,293 + BPHYT_RS29930 0.77 -1.0
2,268,315 - BPHYT_RS29930 0.78 +0.0
2,268,315 - BPHYT_RS29930 0.78 +0.1
2,268,446 + BPHYT_RS29930 0.88 -0.7
2,268,531 + -0.7
2,268,684 + BPHYT_RS29935 0.45 -1.1
2,268,684 + BPHYT_RS29935 0.45 +0.1
2,268,684 + BPHYT_RS29935 0.45 +0.2
2,268,685 - BPHYT_RS29935 0.46 +0.2
2,268,685 - BPHYT_RS29935 0.46 +0.7
2,268,685 - BPHYT_RS29935 0.46 -0.0
2,268,720 - BPHYT_RS29935 0.74 +0.8
2,268,874 - +1.4
2,269,341 + BPHYT_RS29940 0.17 -0.1
2,269,461 - BPHYT_RS29940 0.21 -1.7
2,269,461 - BPHYT_RS29940 0.21 +0.4
2,269,693 + BPHYT_RS29940 0.29 +0.8
2,269,695 + BPHYT_RS29940 0.29 -0.1
2,269,695 + BPHYT_RS29940 0.29 -2.3
2,269,696 - BPHYT_RS29940 0.29 +0.0
2,269,696 - BPHYT_RS29940 0.29 +0.6
2,269,975 + BPHYT_RS29940 0.38 -0.4
2,269,976 - BPHYT_RS29940 0.38 +0.2
2,270,043 + BPHYT_RS29940 0.41 +0.9
2,270,558 - BPHYT_RS29940 0.59 -2.1
2,270,793 + BPHYT_RS29940 0.67 -0.1
2,270,814 + BPHYT_RS29940 0.67 +0.4
2,270,815 - BPHYT_RS29940 0.67 -0.1
2,271,713 - -1.3
2,271,740 - +0.5
2,271,841 + +0.8
2,271,855 + +0.4
2,271,998 - -0.7
2,272,476 + BPHYT_RS29945 0.24 -1.0

Or see this region's nucleotide sequence