Experiment: 36hr PHYTO MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS04760 and BPHYT_RS04765 are separated by 95 nucleotides BPHYT_RS04765 and BPHYT_RS04770 are separated by 41 nucleotides BPHYT_RS04770 and BPHYT_RS04775 are separated by 16 nucleotides
BPHYT_RS04760: BPHYT_RS04760 - 3-keto-5-aminohexanoate cleavage protein, at 1,099,405 to 1,100,337
_RS04760
BPHYT_RS04765: BPHYT_RS04765 - 2-deoxy-D-ribonate transporter <small>(from data)</small>, at 1,100,433 to 1,101,776
_RS04765
BPHYT_RS04770: BPHYT_RS04770 - short-chain dehydrogenase, at 1,101,818 to 1,102,558
_RS04770
BPHYT_RS04775: BPHYT_RS04775 - 2-deoxy-D-ribonate 3-dehydrogenase <small>(from data)</small>, at 1,102,575 to 1,103,366
_RS04775
Position (kb) 1100
1101
1102 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1099.813 kb on + strand, within BPHYT_RS04760 at 1099.814 kb on - strand, within BPHYT_RS04760 at 1099.849 kb on - strand, within BPHYT_RS04760 at 1099.849 kb on - strand, within BPHYT_RS04760 at 1099.937 kb on - strand, within BPHYT_RS04760 at 1099.937 kb on - strand, within BPHYT_RS04760 at 1100.188 kb on + strand, within BPHYT_RS04760 at 1100.189 kb on - strand, within BPHYT_RS04760 at 1100.420 kb on - strand at 1100.420 kb on - strand at 1100.420 kb on - strand at 1100.490 kb on - strand at 1100.502 kb on - strand at 1100.529 kb on + strand at 1100.529 kb on + strand at 1100.778 kb on + strand, within BPHYT_RS04765 at 1100.778 kb on + strand, within BPHYT_RS04765 at 1100.835 kb on + strand, within BPHYT_RS04765 at 1100.835 kb on + strand, within BPHYT_RS04765 at 1100.835 kb on + strand, within BPHYT_RS04765 at 1100.835 kb on + strand, within BPHYT_RS04765 at 1100.836 kb on - strand, within BPHYT_RS04765 at 1100.836 kb on - strand, within BPHYT_RS04765 at 1100.837 kb on + strand, within BPHYT_RS04765 at 1100.838 kb on - strand, within BPHYT_RS04765 at 1101.202 kb on - strand, within BPHYT_RS04765 at 1101.606 kb on + strand, within BPHYT_RS04765 at 1101.606 kb on + strand, within BPHYT_RS04765 at 1101.774 kb on + strand at 1102.263 kb on - strand, within BPHYT_RS04770 at 1102.263 kb on - strand, within BPHYT_RS04770 at 1102.277 kb on + strand, within BPHYT_RS04770 at 1102.309 kb on + strand, within BPHYT_RS04770 at 1102.477 kb on + strand, within BPHYT_RS04770 at 1102.477 kb on + strand, within BPHYT_RS04770 at 1102.478 kb on - strand, within BPHYT_RS04770 at 1102.481 kb on + strand, within BPHYT_RS04770 at 1102.482 kb on - strand, within BPHYT_RS04770 at 1102.482 kb on - strand, within BPHYT_RS04770 at 1102.513 kb on + strand at 1102.514 kb on - strand at 1102.619 kb on - strand at 1102.619 kb on - strand at 1102.692 kb on + strand, within BPHYT_RS04775 at 1102.693 kb on - strand, within BPHYT_RS04775 at 1102.694 kb on + strand, within BPHYT_RS04775
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO MOI 0.1 remove 1,099,813 + BPHYT_RS04760 0.44 -0.6 1,099,814 - BPHYT_RS04760 0.44 -0.3 1,099,849 - BPHYT_RS04760 0.48 -0.0 1,099,849 - BPHYT_RS04760 0.48 +0.7 1,099,937 - BPHYT_RS04760 0.57 +0.3 1,099,937 - BPHYT_RS04760 0.57 -0.1 1,100,188 + BPHYT_RS04760 0.84 -0.5 1,100,189 - BPHYT_RS04760 0.84 +0.2 1,100,420 - -0.1 1,100,420 - -1.7 1,100,420 - +0.3 1,100,490 - -1.6 1,100,502 - -0.4 1,100,529 + -0.6 1,100,529 + +0.0 1,100,778 + BPHYT_RS04765 0.26 +1.9 1,100,778 + BPHYT_RS04765 0.26 -0.5 1,100,835 + BPHYT_RS04765 0.30 -1.1 1,100,835 + BPHYT_RS04765 0.30 -0.7 1,100,835 + BPHYT_RS04765 0.30 -0.2 1,100,835 + BPHYT_RS04765 0.30 -2.9 1,100,836 - BPHYT_RS04765 0.30 -1.0 1,100,836 - BPHYT_RS04765 0.30 +1.0 1,100,837 + BPHYT_RS04765 0.30 +0.1 1,100,838 - BPHYT_RS04765 0.30 +0.5 1,101,202 - BPHYT_RS04765 0.57 -0.5 1,101,606 + BPHYT_RS04765 0.87 -0.0 1,101,606 + BPHYT_RS04765 0.87 -0.6 1,101,774 + +0.1 1,102,263 - BPHYT_RS04770 0.60 -0.3 1,102,263 - BPHYT_RS04770 0.60 -0.3 1,102,277 + BPHYT_RS04770 0.62 -0.4 1,102,309 + BPHYT_RS04770 0.66 +0.3 1,102,477 + BPHYT_RS04770 0.89 -0.3 1,102,477 + BPHYT_RS04770 0.89 +0.1 1,102,478 - BPHYT_RS04770 0.89 +1.0 1,102,481 + BPHYT_RS04770 0.89 +0.3 1,102,482 - BPHYT_RS04770 0.90 -0.6 1,102,482 - BPHYT_RS04770 0.90 -1.0 1,102,513 + +0.7 1,102,514 - -0.1 1,102,619 - -0.2 1,102,619 - +1.6 1,102,692 + BPHYT_RS04775 0.15 -0.2 1,102,693 - BPHYT_RS04775 0.15 +1.0 1,102,694 + BPHYT_RS04775 0.15 -0.0
Or see this region's nucleotide sequence