Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS35045

Experiment: 36hr PHYTO1 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	36hr PHYTO1 MOI 1
3,464,128	-				-2.7
3,464,153	+				+0.3
3,464,382	-				-0.9
3,464,384	+				-0.5
3,464,384	+				+0.3
3,464,384	+				+0.2
3,464,385	-				-0.9
3,464,385	-				-1.5
3,464,436	-				-0.7
3,464,574	-		BPHYT_RS35040	0.22	-1.1
3,464,574	-		BPHYT_RS35040	0.22	+1.3
3,464,685	-		BPHYT_RS35040	0.41	-0.3
3,464,687	+		BPHYT_RS35040	0.41	-0.3
3,464,727	-		BPHYT_RS35040	0.48	-0.2
3,464,820	-		BPHYT_RS35040	0.63	-0.9
3,465,077	-				+0.1
3,465,077	-				+0.3
3,465,130	+				+0.5
3,465,131	-				+1.1
3,465,225	+		BPHYT_RS35045	0.15	+0.5
3,465,226	-		BPHYT_RS35045	0.15	-0.4
3,465,493	-		BPHYT_RS35045	0.50	-0.2
3,465,666	+		BPHYT_RS35045	0.72	+0.0
3,465,697	-		BPHYT_RS35045	0.76	-0.0
3,465,928	-				-0.3
3,466,206	+		BPHYT_RS35050	0.23	-0.8
3,466,206	+		BPHYT_RS35050	0.23	-0.4
3,466,206	+		BPHYT_RS35050	0.23	+0.3
3,466,206	+		BPHYT_RS35050	0.23	-0.5
3,466,207	-		BPHYT_RS35050	0.24	-0.9
3,466,273	-		BPHYT_RS35050	0.30	-0.7
3,466,604	+		BPHYT_RS35050	0.60	+0.3
3,466,676	+		BPHYT_RS35050	0.66	-0.6
3,466,677	-		BPHYT_RS35050	0.66	-1.2
3,466,677	-		BPHYT_RS35050	0.66	-0.0
3,466,760	+		BPHYT_RS35050	0.74	-0.2