Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS27010
Experiment: 36hr PHYTO1 MOI 1
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 36hr PHYTO1 MOI 1 |
---|---|---|---|---|---|
remove | |||||
1,638,191 | + | +0.7 | |||
1,638,199 | + | +0.2 | |||
1,638,199 | + | -0.2 | |||
1,638,200 | - | -0.5 | |||
1,638,212 | - | +0.5 | |||
1,638,242 | + | -0.1 | |||
1,638,246 | + | -0.1 | |||
1,638,247 | - | +0.8 | |||
1,638,357 | + | -0.3 | |||
1,638,358 | - | -0.8 | |||
1,639,060 | + | +0.7 | |||
1,639,608 | + | BPHYT_RS27015 | 0.75 | +2.3 | |
1,639,726 | + | +0.3 | |||
1,639,989 | + | -0.3 | |||
1,639,989 | + | +0.6 | |||
1,639,989 | + | +0.4 | |||
1,639,990 | - | -0.1 | |||
1,639,990 | - | +0.3 | |||
1,639,992 | - | +0.4 |
Or see this region's nucleotide sequence