Experiment: 36hr PHYTO1 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS23705 and BPHYT_RS23710 are separated by 113 nucleotides BPHYT_RS23710 and BPHYT_RS23715 are separated by 443 nucleotides BPHYT_RS23715 and BPHYT_RS23720 are separated by 91 nucleotides
BPHYT_RS23705: BPHYT_RS23705 - hypothetical protein, at 886,929 to 887,582
_RS23705
BPHYT_RS23710: BPHYT_RS23710 - hypothetical protein, at 887,696 to 888,046
_RS23710
BPHYT_RS23715: BPHYT_RS23715 - hypothetical protein, at 888,490 to 888,756
_RS23715
BPHYT_RS23720: BPHYT_RS23720 - nH(3)-dependent NAD(+) synthetase, at 888,848 to 889,708
_RS23720
Position (kb) 888
889 Strain fitness (log2 ratio) -2
-1
0
1 at 887.628 kb on - strand at 887.628 kb on - strand at 887.846 kb on + strand, within BPHYT_RS23710 at 888.202 kb on + strand at 888.211 kb on - strand at 888.324 kb on - strand at 888.324 kb on - strand at 889.005 kb on + strand, within BPHYT_RS23720 at 889.071 kb on - strand, within BPHYT_RS23720 at 889.143 kb on - strand, within BPHYT_RS23720 at 889.143 kb on - strand, within BPHYT_RS23720 at 889.143 kb on - strand, within BPHYT_RS23720 at 889.246 kb on - strand, within BPHYT_RS23720 at 889.276 kb on + strand, within BPHYT_RS23720 at 889.314 kb on + strand, within BPHYT_RS23720 at 889.314 kb on + strand, within BPHYT_RS23720 at 889.566 kb on + strand, within BPHYT_RS23720 at 889.567 kb on - strand, within BPHYT_RS23720 at 889.567 kb on - strand, within BPHYT_RS23720 at 889.594 kb on - strand, within BPHYT_RS23720
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO1 MOI 1 remove 887,628 - -2.1 887,628 - +0.2 887,846 + BPHYT_RS23710 0.43 -0.2 888,202 + -0.7 888,211 - +0.4 888,324 - -0.3 888,324 - -0.7 889,005 + BPHYT_RS23720 0.18 -0.7 889,071 - BPHYT_RS23720 0.26 -0.2 889,143 - BPHYT_RS23720 0.34 +0.6 889,143 - BPHYT_RS23720 0.34 +0.1 889,143 - BPHYT_RS23720 0.34 -0.1 889,246 - BPHYT_RS23720 0.46 -0.4 889,276 + BPHYT_RS23720 0.50 +0.1 889,314 + BPHYT_RS23720 0.54 -0.3 889,314 + BPHYT_RS23720 0.54 +0.4 889,566 + BPHYT_RS23720 0.83 +1.2 889,567 - BPHYT_RS23720 0.84 +0.9 889,567 - BPHYT_RS23720 0.84 -0.6 889,594 - BPHYT_RS23720 0.87 +0.9
Or see this region's nucleotide sequence