Experiment: 36hr PHYTO1 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS23295 and BPHYT_RS23300 are separated by 52 nucleotides BPHYT_RS23300 and BPHYT_RS23305 are separated by 45 nucleotides BPHYT_RS23305 and BPHYT_RS23310 are separated by 145 nucleotides
BPHYT_RS23295: BPHYT_RS23295 - O-methyltransferase, at 789,734 to 790,348
_RS23295
BPHYT_RS23300: BPHYT_RS23300 - IclR family transcriptional regulator, at 790,401 to 791,012
_RS23300
BPHYT_RS23305: BPHYT_RS23305 - hypothetical protein, at 791,058 to 791,600
_RS23305
BPHYT_RS23310: BPHYT_RS23310 - hypothetical protein, at 791,746 to 792,558
_RS23310
Position (kb) 791
792 Strain fitness (log2 ratio) -2
-1
0
1
2 at 790.070 kb on + strand, within BPHYT_RS23295 at 790.071 kb on - strand, within BPHYT_RS23295 at 790.071 kb on - strand, within BPHYT_RS23295 at 790.163 kb on + strand, within BPHYT_RS23295 at 790.164 kb on - strand, within BPHYT_RS23295 at 790.164 kb on - strand, within BPHYT_RS23295 at 790.228 kb on + strand, within BPHYT_RS23295 at 790.229 kb on - strand, within BPHYT_RS23295 at 791.025 kb on + strand at 791.026 kb on - strand at 791.080 kb on + strand at 791.202 kb on - strand, within BPHYT_RS23305 at 791.314 kb on + strand, within BPHYT_RS23305 at 791.314 kb on + strand, within BPHYT_RS23305 at 791.496 kb on - strand, within BPHYT_RS23305 at 791.721 kb on + strand at 791.722 kb on - strand at 791.724 kb on - strand at 791.774 kb on + strand at 791.775 kb on - strand at 791.903 kb on - strand, within BPHYT_RS23310 at 792.082 kb on + strand, within BPHYT_RS23310 at 792.181 kb on + strand, within BPHYT_RS23310 at 792.218 kb on - strand, within BPHYT_RS23310 at 792.590 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO1 MOI 1 remove 790,070 + BPHYT_RS23295 0.55 -0.3 790,071 - BPHYT_RS23295 0.55 +0.2 790,071 - BPHYT_RS23295 0.55 +0.1 790,163 + BPHYT_RS23295 0.70 +0.6 790,164 - BPHYT_RS23295 0.70 -0.8 790,164 - BPHYT_RS23295 0.70 -0.2 790,228 + BPHYT_RS23295 0.80 -0.4 790,229 - BPHYT_RS23295 0.80 -0.1 791,025 + +0.0 791,026 - +0.6 791,080 + -0.1 791,202 - BPHYT_RS23305 0.27 -1.3 791,314 + BPHYT_RS23305 0.47 -1.5 791,314 + BPHYT_RS23305 0.47 +0.1 791,496 - BPHYT_RS23305 0.81 -2.4 791,721 + -1.4 791,722 - -0.6 791,724 - +1.9 791,774 + -1.6 791,775 - +0.6 791,903 - BPHYT_RS23310 0.19 -0.3 792,082 + BPHYT_RS23310 0.41 +0.5 792,181 + BPHYT_RS23310 0.54 +1.7 792,218 - BPHYT_RS23310 0.58 +0.1 792,590 + +0.1
Or see this region's nucleotide sequence