Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS18610

Experiment: 36hr PHYTO1 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS18605 and BPHYT_RS18610 are separated by 82 nucleotidesBPHYT_RS18610 and BPHYT_RS18615 are separated by 77 nucleotidesBPHYT_RS18615 and BPHYT_RS18620 are separated by 43 nucleotides BPHYT_RS18605: BPHYT_RS18605 - NAD-dependent dehydratase, at 4,184,697 to 4,185,650 _RS18605 BPHYT_RS18610: BPHYT_RS18610 - lytic transglycosylase, at 4,185,733 to 4,187,700 _RS18610 BPHYT_RS18615: BPHYT_RS18615 - 5-formyltetrahydrofolate cyclo-ligase, at 4,187,778 to 4,188,320 _RS18615 BPHYT_RS18620: BPHYT_RS18620 - transcriptional regulator, at 4,188,364 to 4,188,876 _RS18620 Position (kb) 4185 4186 4187 4188Strain fitness (log2 ratio) -2 -1 0 1at 4184.758 kb on + strandat 4184.971 kb on + strand, within BPHYT_RS18605at 4185.019 kb on + strand, within BPHYT_RS18605at 4185.020 kb on - strand, within BPHYT_RS18605at 4185.020 kb on - strand, within BPHYT_RS18605at 4185.086 kb on - strand, within BPHYT_RS18605at 4185.265 kb on + strand, within BPHYT_RS18605at 4185.265 kb on + strand, within BPHYT_RS18605at 4185.266 kb on - strand, within BPHYT_RS18605at 4185.266 kb on - strand, within BPHYT_RS18605at 4185.305 kb on + strand, within BPHYT_RS18605at 4185.305 kb on + strand, within BPHYT_RS18605at 4185.305 kb on + strand, within BPHYT_RS18605at 4185.305 kb on + strand, within BPHYT_RS18605at 4185.305 kb on + strandat 4185.306 kb on - strand, within BPHYT_RS18605at 4185.306 kb on - strand, within BPHYT_RS18605at 4185.539 kb on - strand, within BPHYT_RS18605at 4185.608 kb on + strandat 4185.608 kb on + strandat 4185.627 kb on - strandat 4185.744 kb on + strandat 4185.801 kb on - strandat 4185.830 kb on + strandat 4185.831 kb on - strandat 4185.993 kb on - strand, within BPHYT_RS18610at 4185.993 kb on - strand, within BPHYT_RS18610at 4186.545 kb on - strand, within BPHYT_RS18610at 4187.067 kb on - strand, within BPHYT_RS18610at 4187.246 kb on + strand, within BPHYT_RS18610at 4187.340 kb on - strand, within BPHYT_RS18610at 4187.340 kb on - strand, within BPHYT_RS18610at 4187.468 kb on + strand, within BPHYT_RS18610at 4187.734 kb on + strandat 4187.735 kb on - strandat 4187.735 kb on - strandat 4187.735 kb on - strandat 4187.783 kb on - strandat 4187.889 kb on + strand, within BPHYT_RS18615at 4188.156 kb on + strand, within BPHYT_RS18615at 4188.159 kb on + strand, within BPHYT_RS18615at 4188.220 kb on - strand, within BPHYT_RS18615at 4188.220 kb on - strand, within BPHYT_RS18615at 4188.248 kb on - strand, within BPHYT_RS18615at 4188.330 kb on - strandat 4188.365 kb on + strandat 4188.367 kb on + strandat 4188.368 kb on - strandat 4188.578 kb on - strand, within BPHYT_RS18620at 4188.578 kb on - strand, within BPHYT_RS18620at 4188.582 kb on - strand, within BPHYT_RS18620at 4188.588 kb on + strand, within BPHYT_RS18620at 4188.592 kb on + strand, within BPHYT_RS18620at 4188.612 kb on - strand, within BPHYT_RS18620

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO1 MOI 1
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4,184,758 + -1.4
4,184,971 + BPHYT_RS18605 0.29 -0.6
4,185,019 + BPHYT_RS18605 0.34 -0.7
4,185,020 - BPHYT_RS18605 0.34 -0.0
4,185,020 - BPHYT_RS18605 0.34 +0.0
4,185,086 - BPHYT_RS18605 0.41 +0.6
4,185,265 + BPHYT_RS18605 0.60 -0.0
4,185,265 + BPHYT_RS18605 0.60 +0.7
4,185,266 - BPHYT_RS18605 0.60 -0.2
4,185,266 - BPHYT_RS18605 0.60 +0.3
4,185,305 + BPHYT_RS18605 0.64 -0.0
4,185,305 + BPHYT_RS18605 0.64 +0.1
4,185,305 + BPHYT_RS18605 0.64 -0.2
4,185,305 + BPHYT_RS18605 0.64 -1.8
4,185,305 + -1.3
4,185,306 - BPHYT_RS18605 0.64 +0.6
4,185,306 - BPHYT_RS18605 0.64 -0.3
4,185,539 - BPHYT_RS18605 0.88 -0.2
4,185,608 + +0.1
4,185,608 + +0.2
4,185,627 - -0.7
4,185,744 + -0.5
4,185,801 - -1.2
4,185,830 + +0.3
4,185,831 - -0.0
4,185,993 - BPHYT_RS18610 0.13 +0.3
4,185,993 - BPHYT_RS18610 0.13 -2.0
4,186,545 - BPHYT_RS18610 0.41 -2.3
4,187,067 - BPHYT_RS18610 0.68 -1.9
4,187,246 + BPHYT_RS18610 0.77 -0.2
4,187,340 - BPHYT_RS18610 0.82 +0.7
4,187,340 - BPHYT_RS18610 0.82 -0.3
4,187,468 + BPHYT_RS18610 0.88 -1.8
4,187,734 + -1.5
4,187,735 - -0.2
4,187,735 - -0.3
4,187,735 - -0.4
4,187,783 - +0.7
4,187,889 + BPHYT_RS18615 0.20 +0.9
4,188,156 + BPHYT_RS18615 0.70 -0.7
4,188,159 + BPHYT_RS18615 0.70 -1.7
4,188,220 - BPHYT_RS18615 0.81 -0.2
4,188,220 - BPHYT_RS18615 0.81 -0.7
4,188,248 - BPHYT_RS18615 0.87 +1.1
4,188,330 - -0.4
4,188,365 + -1.6
4,188,367 + +0.7
4,188,368 - -0.7
4,188,578 - BPHYT_RS18620 0.42 +0.6
4,188,578 - BPHYT_RS18620 0.42 +1.3
4,188,582 - BPHYT_RS18620 0.42 +0.3
4,188,588 + BPHYT_RS18620 0.44 +0.7
4,188,592 + BPHYT_RS18620 0.44 +0.7
4,188,612 - BPHYT_RS18620 0.48 -0.0

Or see this region's nucleotide sequence