Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS18610

Experiment: 36hr PHYTO1 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	36hr PHYTO1 MOI 1
4,184,758	+				-1.4
4,184,971	+		BPHYT_RS18605	0.29	-0.6
4,185,019	+		BPHYT_RS18605	0.34	-0.7
4,185,020	-		BPHYT_RS18605	0.34	-0.0
4,185,020	-		BPHYT_RS18605	0.34	+0.0
4,185,086	-		BPHYT_RS18605	0.41	+0.6
4,185,265	+		BPHYT_RS18605	0.60	-0.0
4,185,265	+		BPHYT_RS18605	0.60	+0.7
4,185,266	-		BPHYT_RS18605	0.60	-0.2
4,185,266	-		BPHYT_RS18605	0.60	+0.3
4,185,305	+		BPHYT_RS18605	0.64	-0.0
4,185,305	+		BPHYT_RS18605	0.64	+0.1
4,185,305	+		BPHYT_RS18605	0.64	-0.2
4,185,305	+		BPHYT_RS18605	0.64	-1.8
4,185,305	+				-1.3
4,185,306	-		BPHYT_RS18605	0.64	+0.6
4,185,306	-		BPHYT_RS18605	0.64	-0.3
4,185,539	-		BPHYT_RS18605	0.88	-0.2
4,185,608	+				+0.1
4,185,608	+				+0.2
4,185,627	-				-0.7
4,185,744	+				-0.5
4,185,801	-				-1.2
4,185,830	+				+0.3
4,185,831	-				-0.0
4,185,993	-		BPHYT_RS18610	0.13	+0.3
4,185,993	-		BPHYT_RS18610	0.13	-2.0
4,186,545	-		BPHYT_RS18610	0.41	-2.3
4,187,067	-		BPHYT_RS18610	0.68	-1.9
4,187,246	+		BPHYT_RS18610	0.77	-0.2
4,187,340	-		BPHYT_RS18610	0.82	+0.7
4,187,340	-		BPHYT_RS18610	0.82	-0.3
4,187,468	+		BPHYT_RS18610	0.88	-1.8
4,187,734	+				-1.5
4,187,735	-				-0.2
4,187,735	-				-0.3
4,187,735	-				-0.4
4,187,783	-				+0.7
4,187,889	+		BPHYT_RS18615	0.20	+0.9
4,188,156	+		BPHYT_RS18615	0.70	-0.7
4,188,159	+		BPHYT_RS18615	0.70	-1.7
4,188,220	-		BPHYT_RS18615	0.81	-0.2
4,188,220	-		BPHYT_RS18615	0.81	-0.7
4,188,248	-		BPHYT_RS18615	0.87	+1.1
4,188,330	-				-0.4
4,188,365	+				-1.6
4,188,367	+				+0.7
4,188,368	-				-0.7
4,188,578	-		BPHYT_RS18620	0.42	+0.6
4,188,578	-		BPHYT_RS18620	0.42	+1.3
4,188,582	-		BPHYT_RS18620	0.42	+0.3
4,188,588	+		BPHYT_RS18620	0.44	+0.7
4,188,592	+		BPHYT_RS18620	0.44	+0.7
4,188,612	-		BPHYT_RS18620	0.48	-0.0