Experiment: 36hr PHYTO1 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS17895 and BPHYT_RS17900 overlap by 4 nucleotides BPHYT_RS17900 and BPHYT_RS17905 overlap by 4 nucleotides BPHYT_RS17905 and BPHYT_RS17910 overlap by 4 nucleotides
BPHYT_RS17895: BPHYT_RS17895 - secretin, at 4,040,407 to 4,042,185
_RS17895
BPHYT_RS17900: BPHYT_RS17900 - hypothetical protein, at 4,042,182 to 4,043,114
_RS17900
BPHYT_RS17905: BPHYT_RS17905 - fimbrial assembly family protein, at 4,043,111 to 4,043,830
_RS17905
BPHYT_RS17910: BPHYT_RS17910 - hypothetical protein, at 4,043,827 to 4,044,819
_RS17910
Position (kb) 4043
4044 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 4042.114 kb on + strand at 4042.137 kb on + strand at 4042.138 kb on - strand at 4042.158 kb on + strand at 4042.159 kb on - strand at 4042.161 kb on - strand at 4042.587 kb on + strand, within BPHYT_RS17900 at 4042.677 kb on - strand, within BPHYT_RS17900 at 4042.677 kb on - strand, within BPHYT_RS17900 at 4043.108 kb on + strand at 4043.414 kb on + strand, within BPHYT_RS17905 at 4043.459 kb on + strand, within BPHYT_RS17905 at 4043.459 kb on + strand, within BPHYT_RS17905 at 4043.466 kb on - strand, within BPHYT_RS17905 at 4043.959 kb on + strand, within BPHYT_RS17910 at 4043.960 kb on - strand, within BPHYT_RS17910 at 4044.144 kb on - strand, within BPHYT_RS17910 at 4044.144 kb on - strand, within BPHYT_RS17910 at 4044.176 kb on + strand, within BPHYT_RS17910 at 4044.176 kb on + strand, within BPHYT_RS17910 at 4044.176 kb on + strand, within BPHYT_RS17910 at 4044.176 kb on + strand, within BPHYT_RS17910 at 4044.176 kb on + strand, within BPHYT_RS17910 at 4044.176 kb on + strand, within BPHYT_RS17910 at 4044.177 kb on - strand, within BPHYT_RS17910 at 4044.177 kb on - strand, within BPHYT_RS17910 at 4044.350 kb on + strand, within BPHYT_RS17910 at 4044.351 kb on - strand, within BPHYT_RS17910 at 4044.351 kb on - strand, within BPHYT_RS17910 at 4044.351 kb on - strand, within BPHYT_RS17910 at 4044.365 kb on + strand, within BPHYT_RS17910
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO1 MOI 1 remove 4,042,114 + -0.3 4,042,137 + +0.1 4,042,138 - -1.8 4,042,158 + -0.5 4,042,159 - -0.1 4,042,161 - -0.3 4,042,587 + BPHYT_RS17900 0.43 -0.2 4,042,677 - BPHYT_RS17900 0.53 +0.0 4,042,677 - BPHYT_RS17900 0.53 +0.1 4,043,108 + +0.5 4,043,414 + BPHYT_RS17905 0.42 -0.9 4,043,459 + BPHYT_RS17905 0.48 -0.3 4,043,459 + BPHYT_RS17905 0.48 -0.6 4,043,466 - BPHYT_RS17905 0.49 -0.8 4,043,959 + BPHYT_RS17910 0.13 +0.4 4,043,960 - BPHYT_RS17910 0.13 -2.1 4,044,144 - BPHYT_RS17910 0.32 -0.6 4,044,144 - BPHYT_RS17910 0.32 -1.0 4,044,176 + BPHYT_RS17910 0.35 -0.5 4,044,176 + BPHYT_RS17910 0.35 +0.3 4,044,176 + BPHYT_RS17910 0.35 +0.6 4,044,176 + BPHYT_RS17910 0.35 -0.1 4,044,176 + BPHYT_RS17910 0.35 -0.2 4,044,176 + BPHYT_RS17910 0.35 +1.8 4,044,177 - BPHYT_RS17910 0.35 +0.9 4,044,177 - BPHYT_RS17910 0.35 +1.3 4,044,350 + BPHYT_RS17910 0.53 -1.5 4,044,351 - BPHYT_RS17910 0.53 +0.1 4,044,351 - BPHYT_RS17910 0.53 -0.6 4,044,351 - BPHYT_RS17910 0.53 -1.6 4,044,365 + BPHYT_RS17910 0.54 +3.9
Or see this region's nucleotide sequence