Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS16540

Experiment: 36hr PHYTO1 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	36hr PHYTO1 MOI 1
3,748,369	+		BPHYT_RS16535	0.35	-0.8
3,748,369	+		BPHYT_RS16535	0.35	-0.9
3,748,379	-		BPHYT_RS16535	0.35	-0.3
3,748,379	-		BPHYT_RS16535	0.35	-1.1
3,748,568	-		BPHYT_RS16535	0.49	+0.6
3,748,603	+		BPHYT_RS16535	0.52	-2.6
3,748,651	+		BPHYT_RS16535	0.55	-0.3
3,748,652	-		BPHYT_RS16535	0.55	-2.2
3,748,652	-		BPHYT_RS16535	0.55	+1.2
3,748,652	-		BPHYT_RS16535	0.55	+0.4
3,748,738	+		BPHYT_RS16535	0.62	-0.6
3,748,739	-		BPHYT_RS16535	0.62	+1.8
3,748,753	+		BPHYT_RS16535	0.63	-0.2
3,748,753	+		BPHYT_RS16535	0.63	-0.5
3,748,753	+		BPHYT_RS16535	0.63	-0.6
3,748,754	-		BPHYT_RS16535	0.63	+1.2
3,748,754	-		BPHYT_RS16535	0.63	-0.4
3,748,754	-		BPHYT_RS16535	0.63	-0.1
3,748,885	+		BPHYT_RS16535	0.72	+0.6
3,749,057	+		BPHYT_RS16535	0.85	-0.0
3,749,214	-				-1.7
3,749,263	+				-0.6
3,749,264	-				+1.1
3,749,264	-				-0.3
3,749,430	+		BPHYT_RS16540	0.11	+2.2
3,749,431	-		BPHYT_RS16540	0.11	+1.0
3,749,431	-		BPHYT_RS16540	0.11	+0.7
3,749,431	-		BPHYT_RS16540	0.11	-0.4
3,749,431	-		BPHYT_RS16540	0.11	+0.9
3,749,431	-		BPHYT_RS16540	0.11	-0.1
3,749,510	+		BPHYT_RS16540	0.18	-1.2
3,749,511	-		BPHYT_RS16540	0.19	+0.5
3,749,715	-		BPHYT_RS16540	0.38	+0.6
3,749,828	+		BPHYT_RS16540	0.48	-0.1
3,749,828	+		BPHYT_RS16540	0.48	+1.0
3,749,829	-		BPHYT_RS16540	0.48	+1.0
3,749,963	+		BPHYT_RS16540	0.61	-0.5
3,749,963	+		BPHYT_RS16540	0.61	+1.6
3,749,964	-		BPHYT_RS16540	0.61	+0.3
3,749,978	+		BPHYT_RS16540	0.62	+0.4
3,749,990	+		BPHYT_RS16540	0.63	+1.3
3,749,990	+		BPHYT_RS16540	0.63	-0.9
3,750,062	+		BPHYT_RS16540	0.70	-0.6
3,750,062	+		BPHYT_RS16540	0.70	+2.0
3,750,338	+				-1.5
3,750,384	-				+1.3
3,750,408	+				-0.4
3,750,886	+				-0.1
3,750,990	+				-0.4
3,751,168	-		BPHYT_RS16550	0.31	-1.5
3,751,182	+		BPHYT_RS16550	0.33	-0.8
3,751,183	-		BPHYT_RS16550	0.33	+0.2
3,751,183	-		BPHYT_RS16550	0.33	+0.1
3,751,183	-		BPHYT_RS16550	0.33	-0.7
3,751,183	-		BPHYT_RS16550	0.33	-0.0
3,751,183	-		BPHYT_RS16550	0.33	-0.6