Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS16120

Experiment: 36hr PHYTO1 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	36hr PHYTO1 MOI 1
3,656,400	-		BPHYT_RS16115	0.38	+1.1
3,656,515	+		BPHYT_RS16115	0.47	-0.1
3,656,528	+		BPHYT_RS16115	0.48	+0.5
3,656,529	-		BPHYT_RS16115	0.48	-0.4
3,656,529	-		BPHYT_RS16115	0.48	+0.2
3,656,627	+				-1.1
3,656,675	+		BPHYT_RS16115	0.59	-0.1
3,656,730	-		BPHYT_RS16115	0.63	-1.2
3,656,786	+		BPHYT_RS16115	0.67	-0.8
3,656,786	+		BPHYT_RS16115	0.67	-1.5
3,656,786	+		BPHYT_RS16115	0.67	+0.5
3,656,787	-		BPHYT_RS16115	0.67	+2.2
3,656,807	+		BPHYT_RS16115	0.69	-0.4
3,656,808	-		BPHYT_RS16115	0.69	-0.9
3,656,808	-		BPHYT_RS16115	0.69	+0.5
3,656,822	+		BPHYT_RS16115	0.70	+0.3
3,656,822	+		BPHYT_RS16115	0.70	+1.2
3,657,240	+				+0.5
3,657,244	+				+0.2
3,657,244	+				+0.2
3,657,244	+				-0.1
3,657,461	+		BPHYT_RS16120	0.22	+0.3
3,657,461	+		BPHYT_RS16120	0.22	-0.3
3,657,501	+		BPHYT_RS16120	0.27	+2.6
3,657,576	-		BPHYT_RS16120	0.37	-0.6
3,657,651	+		BPHYT_RS16120	0.46	-0.9
3,657,651	+		BPHYT_RS16120	0.46	+3.8
3,657,652	-		BPHYT_RS16120	0.46	+2.2
3,657,915	-		BPHYT_RS16120	0.80	+0.6
3,657,915	-		BPHYT_RS16120	0.80	+0.1
3,657,993	-				+0.9
3,658,253	+				+0.8
3,658,253	+				+0.2
3,658,254	-				-1.8
3,658,254	-				-0.7
3,658,254	-				+1.1
3,658,254	-				-0.9
3,658,257	-				+0.1
3,658,322	-				+1.7
3,658,507	-		BPHYT_RS16125	0.21	+0.2
3,658,507	-		BPHYT_RS16125	0.21	+1.0
3,658,545	+		BPHYT_RS16125	0.28	-0.1
3,658,546	-		BPHYT_RS16125	0.29	+0.2
3,658,600	+		BPHYT_RS16125	0.40	-0.8
3,658,600	+		BPHYT_RS16125	0.40	+1.0
3,658,600	+		BPHYT_RS16125	0.40	-1.1
3,658,600	+		BPHYT_RS16125	0.40	-0.5
3,658,600	+		BPHYT_RS16125	0.40	-0.1
3,658,914	+				+2.2
3,658,914	+				-0.1
3,658,914	+				-0.0
3,658,914	+				-1.6
3,658,915	-				-1.4