Experiment: 36hr PHYTO1 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS16085 and BPHYT_RS16090 are separated by 25 nucleotides BPHYT_RS16090 and BPHYT_RS16095 are separated by 57 nucleotides BPHYT_RS16095 and BPHYT_RS16100 are separated by 106 nucleotides BPHYT_RS16100 and BPHYT_RS16105 overlap by 4 nucleotides
BPHYT_RS16085: BPHYT_RS16085 - DeoR faimly transcriptional regulator, at 3,650,681 to 3,651,628
_RS16085
BPHYT_RS16090: BPHYT_RS16090 - hypothetical protein, at 3,651,654 to 3,651,950
_RS16090
BPHYT_RS16095: BPHYT_RS16095 - ABC transporter for D-Sorbitol, ATPase component (from data) , at 3,652,008 to 3,653,117
_RS16095
BPHYT_RS16100: BPHYT_RS16100 - HAD family hydrolase, at 3,653,224 to 3,653,937
_RS16100
BPHYT_RS16105: BPHYT_RS16105 - ABC transporter for D-Sorbitol, permease component 1 (from data) , at 3,653,934 to 3,654,809
_RS16105
Position (kb)
3652
3653
3654 Strain fitness (log2 ratio)
-2
-1
0
1 at 3651.150 kb on - strand, within BPHYT_RS16085 at 3651.150 kb on - strand, within BPHYT_RS16085 at 3651.361 kb on + strand, within BPHYT_RS16085 at 3651.656 kb on - strand at 3651.766 kb on + strand, within BPHYT_RS16090 at 3651.767 kb on - strand, within BPHYT_RS16090 at 3651.941 kb on - strand at 3652.034 kb on + strand at 3652.116 kb on - strand at 3652.116 kb on - strand at 3652.116 kb on - strand at 3652.183 kb on + strand, within BPHYT_RS16095 at 3652.553 kb on - strand, within BPHYT_RS16095 at 3652.840 kb on + strand, within BPHYT_RS16095 at 3652.859 kb on - strand, within BPHYT_RS16095 at 3652.994 kb on + strand, within BPHYT_RS16095 at 3653.080 kb on + strand at 3653.106 kb on + strand at 3653.132 kb on + strand at 3653.132 kb on + strand at 3653.132 kb on + strand at 3653.133 kb on - strand at 3653.133 kb on - strand at 3653.133 kb on - strand at 3653.138 kb on + strand at 3653.138 kb on + strand at 3653.138 kb on + strand at 3653.157 kb on - strand at 3653.195 kb on + strand at 3653.248 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO1 MOI 1 remove 3,651,150 - BPHYT_RS16085 0.49 +1.7 3,651,150 - BPHYT_RS16085 0.49 +0.9 3,651,361 + BPHYT_RS16085 0.72 -0.8 3,651,656 - -2.6 3,651,766 + BPHYT_RS16090 0.38 -0.1 3,651,767 - BPHYT_RS16090 0.38 +0.9 3,651,941 - -0.2 3,652,034 + +0.4 3,652,116 - -0.8 3,652,116 - -0.3 3,652,116 - +0.8 3,652,183 + BPHYT_RS16095 0.16 -0.4 3,652,553 - BPHYT_RS16095 0.49 -0.9 3,652,840 + BPHYT_RS16095 0.75 +0.1 3,652,859 - BPHYT_RS16095 0.77 -2.4 3,652,994 + BPHYT_RS16095 0.89 -0.8 3,653,080 + +0.6 3,653,106 + -0.2 3,653,132 + +1.1 3,653,132 + -0.9 3,653,132 + -0.1 3,653,133 - -0.2 3,653,133 - -0.3 3,653,133 - -0.6 3,653,138 + -0.5 3,653,138 + -1.5 3,653,138 + -2.3 3,653,157 - -0.4 3,653,195 + +0.2 3,653,248 + -0.0
Or see this region's nucleotide sequence