Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS11145

Experiment: 36hr PHYTO1 MOI 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS11140 and BPHYT_RS11145 are separated by 20 nucleotidesBPHYT_RS11145 and BPHYT_RS11150 are separated by 251 nucleotides BPHYT_RS11140: BPHYT_RS11140 - major facilitator transporter, at 2,531,625 to 2,533,025 _RS11140 BPHYT_RS11145: BPHYT_RS11145 - short-chain dehydrogenase, at 2,533,046 to 2,533,819 _RS11145 BPHYT_RS11150: BPHYT_RS11150 - LysR family transcriptional regulator, at 2,534,071 to 2,535,000 _RS11150 Position (kb) 2533 2534Strain fitness (log2 ratio) -2 -1 0 1at 2532.156 kb on + strand, within BPHYT_RS11140at 2532.621 kb on - strand, within BPHYT_RS11140at 2533.847 kb on - strandat 2533.979 kb on - strandat 2533.982 kb on - strandat 2534.065 kb on + strandat 2534.065 kb on + strandat 2534.555 kb on + strand, within BPHYT_RS11150

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO1 MOI 1
remove
2,532,156 + BPHYT_RS11140 0.38 +1.7
2,532,621 - BPHYT_RS11140 0.71 +0.0
2,533,847 - -0.1
2,533,979 - -0.4
2,533,982 - -0.4
2,534,065 + -0.7
2,534,065 + -1.9
2,534,555 + BPHYT_RS11150 0.52 -1.4

Or see this region's nucleotide sequence