Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS08215

Experiment: 36hr PHYTO1 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	36hr PHYTO1 MOI 1
1,877,364	-		BPHYT_RS08210	0.60	+2.6
1,877,431	+		BPHYT_RS08210	0.64	+1.2
1,877,479	+		BPHYT_RS08210	0.66	-1.4
1,877,479	+		BPHYT_RS08210	0.66	-0.1
1,877,656	-		BPHYT_RS08210	0.76	+0.2
1,877,998	-				-1.3
1,878,123	-				+0.1
1,878,126	+				-0.6
1,878,126	+				-0.2
1,878,213	-				+0.7
1,878,375	+		BPHYT_RS08215	0.20	+0.2
1,878,822	+		BPHYT_RS08215	0.53	-1.0
1,879,113	+		BPHYT_RS08215	0.73	-0.9
1,879,113	+		BPHYT_RS08215	0.73	-0.9
1,879,143	+		BPHYT_RS08215	0.76	-1.5
1,879,143	+		BPHYT_RS08215	0.76	+0.8
1,879,143	+		BPHYT_RS08215	0.76	-0.3
1,879,144	-		BPHYT_RS08215	0.76	-1.6
1,879,144	-		BPHYT_RS08215	0.76	+0.3
1,879,144	-		BPHYT_RS08215	0.76	-2.0
1,879,382	+				-0.1
1,879,393	-				+0.1
1,879,417	+				-0.6
1,879,418	-				-1.0
1,879,437	+				-0.7
1,879,437	+				+0.1
1,879,438	-				-0.5
1,879,527	-				+0.6
1,879,820	+		BPHYT_RS08220	0.40	+0.8
1,879,821	-		BPHYT_RS08220	0.40	+1.1
1,879,821	-		BPHYT_RS08220	0.40	+0.4
1,879,821	-		BPHYT_RS08220	0.40	-1.5
1,879,871	+		BPHYT_RS08220	0.47	-0.6
1,879,872	-		BPHYT_RS08220	0.47	+0.7
1,880,437	+				+0.1
1,880,438	-				+0.6
1,880,454	+				+1.2