Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS06790

Experiment: 36hr PHYTO1 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	36hr PHYTO1 MOI 1
1,534,786	+		BPHYT_RS06785	0.27	-0.2
1,534,787	-		BPHYT_RS06785	0.27	-0.2
1,534,787	-		BPHYT_RS06785	0.27	-0.4
1,534,790	+		BPHYT_RS06785	0.28	-0.4
1,534,793	+		BPHYT_RS06785	0.28	+0.7
1,534,799	+		BPHYT_RS06785	0.28	-2.1
1,534,811	+		BPHYT_RS06785	0.29	-0.6
1,535,081	+		BPHYT_RS06785	0.53	-0.2
1,535,294	+		BPHYT_RS06785	0.71	-1.1
1,535,294	+		BPHYT_RS06785	0.71	-0.9
1,535,295	-		BPHYT_RS06785	0.71	+0.6
1,535,295	-		BPHYT_RS06785	0.71	+0.1
1,535,408	+		BPHYT_RS06785	0.81	+1.9
1,535,408	+		BPHYT_RS06785	0.81	-2.0
1,535,408	+		BPHYT_RS06785	0.81	+1.5
1,535,408	+		BPHYT_RS06785	0.81	+0.0
1,535,408	+		BPHYT_RS06785	0.81	-1.7
1,535,408	+		BPHYT_RS06785	0.81	+0.2
1,535,408	+		BPHYT_RS06785	0.81	+0.8
1,535,408	+		BPHYT_RS06785	0.81	+0.2
1,535,408	+		BPHYT_RS06785	0.81	+0.6
1,535,408	+		BPHYT_RS06785	0.81	+0.8
1,535,409	-		BPHYT_RS06785	0.81	+0.3
1,535,409	-		BPHYT_RS06785	0.81	+0.6
1,535,409	-		BPHYT_RS06785	0.81	-0.5
1,535,409	-		BPHYT_RS06785	0.81	+0.5
1,535,415	-		BPHYT_RS06785	0.82	-0.8
1,535,429	+		BPHYT_RS06785	0.83	+3.2
1,535,430	-		BPHYT_RS06785	0.83	-0.1
1,535,463	-		BPHYT_RS06785	0.86	+0.4
1,535,611	-				-1.4
1,535,895	+		BPHYT_RS06790	0.23	-0.8
1,535,895	+		BPHYT_RS06790	0.23	-1.0
1,535,896	-		BPHYT_RS06790	0.23	-1.7
1,535,896	-		BPHYT_RS06790	0.23	-2.6
1,536,075	+		BPHYT_RS06790	0.50	-1.6
1,536,076	-		BPHYT_RS06790	0.50	-1.6
1,536,076	-		BPHYT_RS06790	0.50	-0.4
1,536,076	-		BPHYT_RS06790	0.50	-1.5
1,536,076	-		BPHYT_RS06790	0.50	-0.0
1,536,076	-		BPHYT_RS06790	0.50	-1.5
1,536,159	+		BPHYT_RS06790	0.63	-0.7
1,536,322	+		BPHYT_RS06790	0.88	-0.7
1,536,322	+		BPHYT_RS06790	0.88	-1.3
1,536,385	+				-0.8
1,536,404	+				-0.8
1,536,405	-				-0.9
1,536,405	-				-1.4
1,536,408	+				-0.8
1,536,408	+				-0.6
1,536,409	-				-0.8
1,536,420	-				-0.9
1,536,438	+				-0.3
1,536,438	+				-1.1
1,536,439	-				-0.7
1,536,439	-				+0.6
1,536,481	-				+0.5
1,536,545	+				-0.1
1,536,546	-				+0.6
1,536,548	+				-0.4
1,536,613	+				+0.0
1,536,613	+				-0.3
1,536,613	+				+0.5
1,536,613	+				+1.6
1,536,613	+				-0.8
1,536,613	+				+0.2
1,536,613	+				-0.6
1,536,613	+				-1.3
1,536,613	+				+0.3
1,536,614	-				+2.2
1,536,614	-				+0.0
1,536,614	-				+0.1
1,536,614	-				+0.2
1,536,614	-				+0.1
1,536,614	-				-0.5
1,536,637	+				-0.2
1,536,638	-				-0.8
1,536,907	+		BPHYT_RS06795	0.49	+0.3
1,536,954	+		BPHYT_RS06795	0.56	-0.4
1,537,073	+		BPHYT_RS06795	0.74	-0.5
1,537,074	-		BPHYT_RS06795	0.74	-0.6
1,537,074	-		BPHYT_RS06795	0.74	-0.3
1,537,234	+				-1.1
1,537,248	-				+0.1
1,537,248	-				+1.1
1,537,248	-				+0.1
1,537,260	-				+0.4