Experiment: 36hr PHYTO1 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS06275 and BPHYT_RS06280 are separated by 265 nucleotides BPHYT_RS06280 and BPHYT_RS06285 are separated by 178 nucleotides BPHYT_RS06285 and BPHYT_RS06290 are separated by 49 nucleotides
BPHYT_RS06275: BPHYT_RS06275 - hydrolase, at 1,431,091 to 1,432,686
_RS06275
BPHYT_RS06280: BPHYT_RS06280 - transporter, at 1,432,952 to 1,433,377
_RS06280
BPHYT_RS06285: BPHYT_RS06285 - diguanylate cyclase, at 1,433,556 to 1,434,056
_RS06285
BPHYT_RS06290: BPHYT_RS06290 - hypothetical protein, at 1,434,106 to 1,434,465
_RS06290
Position (kb) 1432
1433
1434 Strain fitness (log2 ratio) -1
0
1 at 1431.980 kb on + strand, within BPHYT_RS06275 at 1431.980 kb on + strand, within BPHYT_RS06275 at 1431.981 kb on - strand, within BPHYT_RS06275 at 1432.016 kb on + strand, within BPHYT_RS06275 at 1432.016 kb on + strand, within BPHYT_RS06275 at 1432.017 kb on - strand, within BPHYT_RS06275 at 1432.095 kb on - strand, within BPHYT_RS06275 at 1432.095 kb on - strand, within BPHYT_RS06275 at 1432.260 kb on - strand, within BPHYT_RS06275 at 1432.368 kb on - strand, within BPHYT_RS06275 at 1432.520 kb on + strand, within BPHYT_RS06275 at 1432.521 kb on - strand, within BPHYT_RS06275 at 1432.781 kb on - strand at 1432.781 kb on - strand at 1432.787 kb on + strand at 1433.241 kb on + strand, within BPHYT_RS06280 at 1433.375 kb on + strand at 1433.375 kb on + strand at 1433.376 kb on - strand at 1433.386 kb on + strand at 1433.387 kb on - strand at 1433.725 kb on - strand, within BPHYT_RS06285 at 1433.739 kb on - strand, within BPHYT_RS06285 at 1434.014 kb on - strand at 1434.101 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO1 MOI 1 remove 1,431,980 + BPHYT_RS06275 0.56 -0.2 1,431,980 + BPHYT_RS06275 0.56 -0.1 1,431,981 - BPHYT_RS06275 0.56 -0.8 1,432,016 + BPHYT_RS06275 0.58 -0.4 1,432,016 + BPHYT_RS06275 0.58 +0.1 1,432,017 - BPHYT_RS06275 0.58 -1.3 1,432,095 - BPHYT_RS06275 0.63 -0.3 1,432,095 - BPHYT_RS06275 0.63 -1.0 1,432,260 - BPHYT_RS06275 0.73 -1.3 1,432,368 - BPHYT_RS06275 0.80 +0.1 1,432,520 + BPHYT_RS06275 0.90 +0.2 1,432,521 - BPHYT_RS06275 0.90 -0.2 1,432,781 - -1.0 1,432,781 - -0.5 1,432,787 + +0.1 1,433,241 + BPHYT_RS06280 0.68 +0.2 1,433,375 + -0.1 1,433,375 + +0.0 1,433,376 - -0.3 1,433,386 + -0.2 1,433,387 - -1.5 1,433,725 - BPHYT_RS06285 0.34 -0.1 1,433,739 - BPHYT_RS06285 0.37 +0.3 1,434,014 - -0.1 1,434,101 + -0.1
Or see this region's nucleotide sequence