Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS05270

Experiment: 36hr PHYTO1 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS05260 and BPHYT_RS05265 are separated by 106 nucleotidesBPHYT_RS05265 and BPHYT_RS05270 are separated by 159 nucleotidesBPHYT_RS05270 and BPHYT_RS05275 are separated by 302 nucleotides BPHYT_RS05260: BPHYT_RS05260 - hypothetical protein, at 1,214,475 to 1,215,032 _RS05260 BPHYT_RS05265: BPHYT_RS05265 - hypothetical protein, at 1,215,139 to 1,215,414 _RS05265 BPHYT_RS05270: BPHYT_RS05270 - hypothetical protein, at 1,215,574 to 1,216,323 _RS05270 BPHYT_RS05275: BPHYT_RS05275 - integrase, at 1,216,626 to 1,217,501 _RS05275 Position (kb) 1215 1216 1217Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1214.580 kb on + strand, within BPHYT_RS05260at 1214.580 kb on + strand, within BPHYT_RS05260at 1214.655 kb on + strand, within BPHYT_RS05260at 1214.664 kb on + strand, within BPHYT_RS05260at 1214.664 kb on + strand, within BPHYT_RS05260at 1214.665 kb on - strand, within BPHYT_RS05260at 1214.665 kb on - strand, within BPHYT_RS05260at 1214.665 kb on - strand, within BPHYT_RS05260at 1214.719 kb on - strand, within BPHYT_RS05260at 1214.907 kb on - strand, within BPHYT_RS05260at 1214.924 kb on + strand, within BPHYT_RS05260at 1215.033 kb on - strandat 1215.178 kb on + strand, within BPHYT_RS05265at 1215.179 kb on - strand, within BPHYT_RS05265at 1215.183 kb on - strand, within BPHYT_RS05265at 1215.183 kb on - strand, within BPHYT_RS05265at 1215.215 kb on + strand, within BPHYT_RS05265at 1215.221 kb on + strand, within BPHYT_RS05265at 1215.221 kb on + strand, within BPHYT_RS05265at 1215.222 kb on - strand, within BPHYT_RS05265at 1215.277 kb on + strand, within BPHYT_RS05265at 1215.278 kb on - strand, within BPHYT_RS05265at 1215.278 kb on - strand, within BPHYT_RS05265at 1215.278 kb on - strand, within BPHYT_RS05265at 1215.436 kb on + strandat 1215.463 kb on + strandat 1215.463 kb on + strandat 1215.463 kb on + strandat 1215.463 kb on + strandat 1215.464 kb on - strandat 1215.539 kb on + strandat 1215.582 kb on + strandat 1215.688 kb on + strand, within BPHYT_RS05270at 1215.689 kb on - strand, within BPHYT_RS05270at 1215.873 kb on + strand, within BPHYT_RS05270at 1215.873 kb on + strand, within BPHYT_RS05270at 1215.913 kb on + strand, within BPHYT_RS05270at 1215.913 kb on + strand, within BPHYT_RS05270at 1215.914 kb on - strand, within BPHYT_RS05270at 1216.056 kb on + strand, within BPHYT_RS05270at 1216.060 kb on + strand, within BPHYT_RS05270at 1216.060 kb on + strand, within BPHYT_RS05270at 1216.060 kb on + strand, within BPHYT_RS05270at 1216.061 kb on - strand, within BPHYT_RS05270at 1216.067 kb on + strand, within BPHYT_RS05270at 1216.077 kb on - strand, within BPHYT_RS05270at 1216.077 kb on - strand, within BPHYT_RS05270at 1216.077 kb on - strand, within BPHYT_RS05270at 1216.302 kb on + strandat 1216.397 kb on - strandat 1216.397 kb on - strandat 1216.419 kb on + strandat 1216.436 kb on - strandat 1216.460 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO1 MOI 1
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1,214,580 + BPHYT_RS05260 0.19 +0.5
1,214,580 + BPHYT_RS05260 0.19 +1.0
1,214,655 + BPHYT_RS05260 0.32 +0.0
1,214,664 + BPHYT_RS05260 0.34 +0.3
1,214,664 + BPHYT_RS05260 0.34 -0.2
1,214,665 - BPHYT_RS05260 0.34 +0.4
1,214,665 - BPHYT_RS05260 0.34 +0.2
1,214,665 - BPHYT_RS05260 0.34 +0.4
1,214,719 - BPHYT_RS05260 0.44 -0.2
1,214,907 - BPHYT_RS05260 0.77 +0.3
1,214,924 + BPHYT_RS05260 0.80 -0.1
1,215,033 - -0.4
1,215,178 + BPHYT_RS05265 0.14 -0.3
1,215,179 - BPHYT_RS05265 0.14 -0.2
1,215,183 - BPHYT_RS05265 0.16 -1.3
1,215,183 - BPHYT_RS05265 0.16 +0.1
1,215,215 + BPHYT_RS05265 0.28 +0.2
1,215,221 + BPHYT_RS05265 0.30 -0.0
1,215,221 + BPHYT_RS05265 0.30 +0.7
1,215,222 - BPHYT_RS05265 0.30 -0.5
1,215,277 + BPHYT_RS05265 0.50 +0.1
1,215,278 - BPHYT_RS05265 0.50 -0.1
1,215,278 - BPHYT_RS05265 0.50 -1.1
1,215,278 - BPHYT_RS05265 0.50 +0.4
1,215,436 + -1.0
1,215,463 + -0.5
1,215,463 + +0.4
1,215,463 + -0.9
1,215,463 + -2.9
1,215,464 - -0.1
1,215,539 + -0.0
1,215,582 + +1.0
1,215,688 + BPHYT_RS05270 0.15 +0.1
1,215,689 - BPHYT_RS05270 0.15 +1.1
1,215,873 + BPHYT_RS05270 0.40 -1.3
1,215,873 + BPHYT_RS05270 0.40 +0.7
1,215,913 + BPHYT_RS05270 0.45 +0.0
1,215,913 + BPHYT_RS05270 0.45 +0.1
1,215,914 - BPHYT_RS05270 0.45 -0.2
1,216,056 + BPHYT_RS05270 0.64 -0.4
1,216,060 + BPHYT_RS05270 0.65 +2.0
1,216,060 + BPHYT_RS05270 0.65 +0.4
1,216,060 + BPHYT_RS05270 0.65 +0.2
1,216,061 - BPHYT_RS05270 0.65 +0.7
1,216,067 + BPHYT_RS05270 0.66 +1.0
1,216,077 - BPHYT_RS05270 0.67 +0.3
1,216,077 - BPHYT_RS05270 0.67 +1.3
1,216,077 - BPHYT_RS05270 0.67 +0.5
1,216,302 + +0.7
1,216,397 - -0.8
1,216,397 - +0.2
1,216,419 + +0.5
1,216,436 - +0.8
1,216,460 - -0.0

Or see this region's nucleotide sequence