Experiment: 36hr PHYTO1 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS04190 and BPHYT_RS04195 are separated by 416 nucleotides BPHYT_RS04195 and BPHYT_RS04200 are separated by 55 nucleotides BPHYT_RS04200 and BPHYT_RS04205 are separated by 174 nucleotides
BPHYT_RS04190: BPHYT_RS04190 - AraC family transcriptional regulator, at 961,212 to 962,168
_RS04190
BPHYT_RS04195: BPHYT_RS04195 - molecular chaperone GroES, at 962,585 to 962,875
_RS04195
BPHYT_RS04200: BPHYT_RS04200 - molecular chaperone GroEL, at 962,931 to 964,571
_RS04200
BPHYT_RS04205: BPHYT_RS04205 - kinase, at 964,746 to 965,606
_RS04205
Position (kb) 962
963
964
965 Strain fitness (log2 ratio) -2
-1
0
1 at 962.167 kb on - strand at 962.281 kb on - strand at 962.327 kb on - strand at 962.327 kb on - strand at 962.394 kb on + strand at 962.394 kb on + strand at 962.394 kb on + strand at 962.395 kb on - strand at 962.395 kb on - strand at 962.403 kb on + strand at 962.434 kb on + strand at 962.434 kb on + strand at 962.434 kb on + strand at 962.434 kb on + strand at 962.435 kb on - strand at 964.744 kb on + strand at 964.838 kb on + strand, within BPHYT_RS04205 at 964.840 kb on + strand, within BPHYT_RS04205 at 964.841 kb on - strand, within BPHYT_RS04205 at 964.841 kb on - strand, within BPHYT_RS04205 at 964.841 kb on - strand, within BPHYT_RS04205 at 964.841 kb on - strand, within BPHYT_RS04205 at 964.888 kb on + strand, within BPHYT_RS04205 at 964.888 kb on + strand, within BPHYT_RS04205 at 964.889 kb on - strand, within BPHYT_RS04205 at 964.889 kb on - strand, within BPHYT_RS04205 at 964.889 kb on - strand, within BPHYT_RS04205 at 964.964 kb on + strand, within BPHYT_RS04205 at 964.964 kb on + strand, within BPHYT_RS04205 at 965.042 kb on + strand, within BPHYT_RS04205 at 965.042 kb on + strand, within BPHYT_RS04205 at 965.042 kb on + strand, within BPHYT_RS04205 at 965.083 kb on + strand, within BPHYT_RS04205
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO1 MOI 1 remove 962,167 - +0.2 962,281 - -1.2 962,327 - +0.3 962,327 - +0.5 962,394 + -2.4 962,394 + -1.2 962,394 + +0.4 962,395 - +0.0 962,395 - -0.3 962,403 + -1.9 962,434 + -0.2 962,434 + -0.1 962,434 + -1.3 962,434 + -0.7 962,435 - +0.2 964,744 + -1.0 964,838 + BPHYT_RS04205 0.11 -0.3 964,840 + BPHYT_RS04205 0.11 +0.1 964,841 - BPHYT_RS04205 0.11 -0.1 964,841 - BPHYT_RS04205 0.11 +0.7 964,841 - BPHYT_RS04205 0.11 +0.7 964,841 - BPHYT_RS04205 0.11 -1.9 964,888 + BPHYT_RS04205 0.16 -1.0 964,888 + BPHYT_RS04205 0.16 -1.0 964,889 - BPHYT_RS04205 0.17 -0.5 964,889 - BPHYT_RS04205 0.17 -1.6 964,889 - BPHYT_RS04205 0.17 -0.8 964,964 + BPHYT_RS04205 0.25 -1.6 964,964 + BPHYT_RS04205 0.25 -1.0 965,042 + BPHYT_RS04205 0.34 -0.7 965,042 + BPHYT_RS04205 0.34 -0.8 965,042 + BPHYT_RS04205 0.34 +0.9 965,083 + BPHYT_RS04205 0.39 +0.7
Or see this region's nucleotide sequence